Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24850

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24845 and BWI76_RS24850 are separated by 10 nucleotidesBWI76_RS24850 and BWI76_RS24855 are separated by 316 nucleotides BWI76_RS24845: BWI76_RS24845 - PfkB domain-containing protein, at 5,177,701 to 5,178,648 _RS24845 BWI76_RS24850: BWI76_RS24850 - DeoR family transcriptional regulator, at 5,178,659 to 5,179,489 _RS24850 BWI76_RS24855: BWI76_RS24855 - tagatose-bisphosphate aldolase, at 5,179,806 to 5,180,660 _RS24855 Position (kb) 5178 5179 5180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5177.831 kb on + strand, within BWI76_RS24845at 5177.859 kb on - strand, within BWI76_RS24845at 5177.935 kb on + strand, within BWI76_RS24845at 5178.036 kb on + strand, within BWI76_RS24845at 5178.221 kb on + strand, within BWI76_RS24845at 5178.264 kb on + strand, within BWI76_RS24845at 5178.264 kb on + strand, within BWI76_RS24845at 5178.272 kb on - strand, within BWI76_RS24845at 5178.288 kb on + strand, within BWI76_RS24845at 5178.316 kb on + strandat 5178.345 kb on + strand, within BWI76_RS24845at 5178.409 kb on - strand, within BWI76_RS24845at 5178.656 kb on + strandat 5178.656 kb on + strandat 5178.775 kb on + strand, within BWI76_RS24850at 5178.932 kb on + strand, within BWI76_RS24850at 5178.972 kb on - strand, within BWI76_RS24850at 5179.031 kb on + strand, within BWI76_RS24850at 5179.073 kb on + strand, within BWI76_RS24850at 5179.298 kb on + strand, within BWI76_RS24850at 5179.299 kb on + strand, within BWI76_RS24850at 5179.329 kb on + strand, within BWI76_RS24850at 5179.352 kb on + strand, within BWI76_RS24850at 5179.352 kb on + strand, within BWI76_RS24850at 5179.493 kb on + strandat 5179.708 kb on + strandat 5180.045 kb on + strand, within BWI76_RS24855at 5180.085 kb on + strand, within BWI76_RS24855at 5180.328 kb on + strand, within BWI76_RS24855at 5180.434 kb on + strand, within BWI76_RS24855at 5180.434 kb on + strand, within BWI76_RS24855at 5180.442 kb on - strand, within BWI76_RS24855

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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5,177,831 + BWI76_RS24845 0.14 -0.1
5,177,859 - BWI76_RS24845 0.17 -1.1
5,177,935 + BWI76_RS24845 0.25 -1.8
5,178,036 + BWI76_RS24845 0.35 +0.7
5,178,221 + BWI76_RS24845 0.55 -0.7
5,178,264 + BWI76_RS24845 0.59 -1.8
5,178,264 + BWI76_RS24845 0.59 +0.0
5,178,272 - BWI76_RS24845 0.60 +0.2
5,178,288 + BWI76_RS24845 0.62 -0.3
5,178,316 + +3.1
5,178,345 + BWI76_RS24845 0.68 -1.7
5,178,409 - BWI76_RS24845 0.75 -0.6
5,178,656 + -0.1
5,178,656 + +3.8
5,178,775 + BWI76_RS24850 0.14 +1.0
5,178,932 + BWI76_RS24850 0.33 -3.0
5,178,972 - BWI76_RS24850 0.38 -3.6
5,179,031 + BWI76_RS24850 0.45 -1.8
5,179,073 + BWI76_RS24850 0.50 -2.7
5,179,298 + BWI76_RS24850 0.77 -4.4
5,179,299 + BWI76_RS24850 0.77 -1.7
5,179,329 + BWI76_RS24850 0.81 -2.0
5,179,352 + BWI76_RS24850 0.83 -1.1
5,179,352 + BWI76_RS24850 0.83 -2.6
5,179,493 + -1.5
5,179,708 + +0.7
5,180,045 + BWI76_RS24855 0.28 +0.1
5,180,085 + BWI76_RS24855 0.33 +0.1
5,180,328 + BWI76_RS24855 0.61 -0.6
5,180,434 + BWI76_RS24855 0.73 +1.3
5,180,434 + BWI76_RS24855 0.73 +0.4
5,180,442 - BWI76_RS24855 0.74 +0.7

Or see this region's nucleotide sequence