Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23665

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23660 and BWI76_RS23665 are separated by 53 nucleotidesBWI76_RS23665 and BWI76_RS23670 are separated by 363 nucleotides BWI76_RS23660: BWI76_RS23660 - pentose kinase, at 4,937,909 to 4,939,414 _RS23660 BWI76_RS23665: BWI76_RS23665 - 2-deoxyribose-5-phosphate aldolase, at 4,939,468 to 4,940,217 _RS23665 BWI76_RS23670: BWI76_RS23670 - alkaline phosphatase, at 4,940,581 to 4,941,381 _RS23670 Position (kb) 4939 4940 4941Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4938.529 kb on + strand, within BWI76_RS23660at 4938.669 kb on - strand, within BWI76_RS23660at 4938.781 kb on + strand, within BWI76_RS23660at 4939.262 kb on + strand, within BWI76_RS23660at 4939.279 kb on + strandat 4939.279 kb on + strandat 4939.287 kb on - strandat 4939.287 kb on - strandat 4939.828 kb on + strand, within BWI76_RS23665at 4939.857 kb on - strand, within BWI76_RS23665at 4939.879 kb on + strand, within BWI76_RS23665at 4940.000 kb on + strand, within BWI76_RS23665at 4940.042 kb on + strand, within BWI76_RS23665at 4940.088 kb on + strand, within BWI76_RS23665at 4940.093 kb on + strand, within BWI76_RS23665at 4940.133 kb on - strand, within BWI76_RS23665at 4940.133 kb on - strand, within BWI76_RS23665at 4940.331 kb on - strandat 4940.466 kb on - strandat 4940.473 kb on + strandat 4940.566 kb on + strandat 4940.566 kb on + strandat 4940.571 kb on + strandat 4940.576 kb on + strandat 4940.579 kb on - strandat 4940.623 kb on + strandat 4941.022 kb on - strand, within BWI76_RS23670at 4941.207 kb on - strand, within BWI76_RS23670

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,938,529 + BWI76_RS23660 0.41 +0.4
4,938,669 - BWI76_RS23660 0.50 -0.5
4,938,781 + BWI76_RS23660 0.58 +0.5
4,939,262 + BWI76_RS23660 0.90 -0.9
4,939,279 + -0.5
4,939,279 + +1.0
4,939,287 - -0.7
4,939,287 - +0.5
4,939,828 + BWI76_RS23665 0.48 -1.9
4,939,857 - BWI76_RS23665 0.52 -0.6
4,939,879 + BWI76_RS23665 0.55 -2.0
4,940,000 + BWI76_RS23665 0.71 -4.0
4,940,042 + BWI76_RS23665 0.77 -0.4
4,940,088 + BWI76_RS23665 0.83 -1.5
4,940,093 + BWI76_RS23665 0.83 -2.4
4,940,133 - BWI76_RS23665 0.89 -2.9
4,940,133 - BWI76_RS23665 0.89 -1.6
4,940,331 - +0.0
4,940,466 - -0.1
4,940,473 + +0.0
4,940,566 + -1.8
4,940,566 + -1.2
4,940,571 + -0.7
4,940,576 + -0.3
4,940,579 - -0.3
4,940,623 + -1.0
4,941,022 - BWI76_RS23670 0.55 -1.0
4,941,207 - BWI76_RS23670 0.78 +0.3

Or see this region's nucleotide sequence