Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23315 and BWI76_RS23320 are separated by 23 nucleotides BWI76_RS23320 and BWI76_RS23325 are separated by 19 nucleotides BWI76_RS23325 and BWI76_RS23330 are separated by 94 nucleotides BWI76_RS23330 and BWI76_RS23335 overlap by 40 nucleotides BWI76_RS23335 and BWI76_RS23340 overlap by 4 nucleotides
BWI76_RS23315: BWI76_RS23315 - acyl-[ACP]--phospholipid O-acyltransferase, at 4,862,058 to 4,864,217
_RS23315
BWI76_RS23320: BWI76_RS23320 - hypothetical protein, at 4,864,241 to 4,864,432
_RS23320
BWI76_RS23325: BWI76_RS23325 - hypothetical protein, at 4,864,452 to 4,864,745
_RS23325
BWI76_RS23330: BWI76_RS23330 - transcriptional regulator GalR, at 4,864,840 to 4,865,856
_RS23330
BWI76_RS23335: BWI76_RS23335 - GNAT family acetyltransferase, at 4,865,817 to 4,866,296
_RS23335
BWI76_RS23340: BWI76_RS23340 - transcriptional regulator, at 4,866,293 to 4,867,066
_RS23340
Position (kb) 4864
4865
4866 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 4863.927 kb on + strand, within BWI76_RS23315 at 4864.174 kb on - strand at 4864.174 kb on - strand at 4864.313 kb on - strand, within BWI76_RS23320 at 4864.485 kb on + strand, within BWI76_RS23325 at 4864.485 kb on + strand, within BWI76_RS23325 at 4864.495 kb on + strand, within BWI76_RS23325 at 4864.529 kb on + strand, within BWI76_RS23325 at 4864.729 kb on + strand at 4864.737 kb on - strand at 4864.753 kb on - strand at 4865.021 kb on + strand, within BWI76_RS23330 at 4865.038 kb on + strand, within BWI76_RS23330 at 4865.092 kb on + strand, within BWI76_RS23330 at 4865.276 kb on - strand, within BWI76_RS23330 at 4865.306 kb on - strand, within BWI76_RS23330 at 4865.395 kb on - strand, within BWI76_RS23330 at 4865.440 kb on + strand, within BWI76_RS23330 at 4865.517 kb on + strand, within BWI76_RS23330 at 4865.962 kb on + strand, within BWI76_RS23335 at 4865.970 kb on - strand, within BWI76_RS23335 at 4865.970 kb on - strand, within BWI76_RS23335 at 4866.007 kb on - strand, within BWI76_RS23335 at 4866.161 kb on + strand, within BWI76_RS23335 at 4866.251 kb on + strand at 4866.274 kb on + strand at 4866.283 kb on + strand at 4866.296 kb on + strand at 4866.597 kb on + strand, within BWI76_RS23340
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,863,927 + BWI76_RS23315 0.87 -0.6 4,864,174 - +0.7 4,864,174 - +0.9 4,864,313 - BWI76_RS23320 0.38 +1.0 4,864,485 + BWI76_RS23325 0.11 +0.8 4,864,485 + BWI76_RS23325 0.11 -1.1 4,864,495 + BWI76_RS23325 0.15 -0.6 4,864,529 + BWI76_RS23325 0.26 +0.5 4,864,729 + -0.1 4,864,737 - -1.5 4,864,753 - -1.9 4,865,021 + BWI76_RS23330 0.18 -0.3 4,865,038 + BWI76_RS23330 0.19 -1.4 4,865,092 + BWI76_RS23330 0.25 -4.5 4,865,276 - BWI76_RS23330 0.43 -1.8 4,865,306 - BWI76_RS23330 0.46 -2.6 4,865,395 - BWI76_RS23330 0.55 -5.2 4,865,440 + BWI76_RS23330 0.59 -4.8 4,865,517 + BWI76_RS23330 0.67 -4.7 4,865,962 + BWI76_RS23335 0.30 -1.5 4,865,970 - BWI76_RS23335 0.32 +1.0 4,865,970 - BWI76_RS23335 0.32 -0.3 4,866,007 - BWI76_RS23335 0.40 -0.2 4,866,161 + BWI76_RS23335 0.72 +0.7 4,866,251 + -0.7 4,866,274 + +1.3 4,866,283 + +0.7 4,866,296 + +0.1 4,866,597 + BWI76_RS23340 0.39 +1.3
Or see this region's nucleotide sequence