Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22420

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22415 and BWI76_RS22420 are separated by 56 nucleotidesBWI76_RS22420 and BWI76_RS22425 are separated by 177 nucleotides BWI76_RS22415: BWI76_RS22415 - transcriptional regulator, at 4,674,048 to 4,674,962 _RS22415 BWI76_RS22420: BWI76_RS22420 - LacI family transcriptional regulator, at 4,675,019 to 4,675,981 _RS22420 BWI76_RS22425: BWI76_RS22425 - metal ABC transporter substrate-binding protein, at 4,676,159 to 4,677,076 _RS22425 Position (kb) 4675 4676Strain fitness (log2 ratio) -3 -2 -1 0 1at 4674.152 kb on - strand, within BWI76_RS22415at 4674.162 kb on - strandat 4674.188 kb on + strand, within BWI76_RS22415at 4674.196 kb on - strand, within BWI76_RS22415at 4674.242 kb on + strand, within BWI76_RS22415at 4674.381 kb on - strand, within BWI76_RS22415at 4674.629 kb on + strand, within BWI76_RS22415at 4674.744 kb on - strand, within BWI76_RS22415at 4674.794 kb on + strand, within BWI76_RS22415at 4674.802 kb on - strand, within BWI76_RS22415at 4674.832 kb on - strand, within BWI76_RS22415at 4674.895 kb on - strandat 4674.948 kb on - strandat 4674.948 kb on - strandat 4674.948 kb on - strandat 4674.986 kb on - strandat 4674.989 kb on - strandat 4675.075 kb on - strandat 4675.132 kb on - strand, within BWI76_RS22420at 4675.258 kb on + strand, within BWI76_RS22420at 4676.162 kb on - strandat 4676.162 kb on - strandat 4676.183 kb on + strandat 4676.191 kb on - strandat 4676.220 kb on - strandat 4676.463 kb on - strand, within BWI76_RS22425at 4676.521 kb on + strand, within BWI76_RS22425at 4676.646 kb on - strand, within BWI76_RS22425at 4676.724 kb on - strand, within BWI76_RS22425at 4676.764 kb on - strand, within BWI76_RS22425at 4676.816 kb on - strand, within BWI76_RS22425

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,674,152 - BWI76_RS22415 0.11 -0.1
4,674,162 - +1.5
4,674,188 + BWI76_RS22415 0.15 -0.6
4,674,196 - BWI76_RS22415 0.16 -0.2
4,674,242 + BWI76_RS22415 0.21 +0.0
4,674,381 - BWI76_RS22415 0.36 -0.8
4,674,629 + BWI76_RS22415 0.63 -0.2
4,674,744 - BWI76_RS22415 0.76 -0.7
4,674,794 + BWI76_RS22415 0.82 -1.4
4,674,802 - BWI76_RS22415 0.82 -1.0
4,674,832 - BWI76_RS22415 0.86 -1.6
4,674,895 - +0.7
4,674,948 - -1.3
4,674,948 - +0.2
4,674,948 - -0.6
4,674,986 - +0.2
4,674,989 - -2.3
4,675,075 - -2.5
4,675,132 - BWI76_RS22420 0.12 -2.7
4,675,258 + BWI76_RS22420 0.25 -2.9
4,676,162 - -1.4
4,676,162 - -3.7
4,676,183 + -0.8
4,676,191 - -0.3
4,676,220 - -2.5
4,676,463 - BWI76_RS22425 0.33 -1.6
4,676,521 + BWI76_RS22425 0.39 -0.7
4,676,646 - BWI76_RS22425 0.53 -0.2
4,676,724 - BWI76_RS22425 0.62 +0.3
4,676,764 - BWI76_RS22425 0.66 -0.1
4,676,816 - BWI76_RS22425 0.72 -0.0

Or see this region's nucleotide sequence