Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20740

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20730 and BWI76_RS20735 overlap by 8 nucleotidesBWI76_RS20735 and BWI76_RS20740 overlap by 1 nucleotidesBWI76_RS20740 and BWI76_RS20745 are separated by 133 nucleotides BWI76_RS20730: BWI76_RS20730 - hypothetical protein, at 4,334,413 to 4,334,610 _RS20730 BWI76_RS20735: BWI76_RS20735 - N-acetylmuramoyl-L-alanine amidase, at 4,334,603 to 4,335,478 _RS20735 BWI76_RS20740: BWI76_RS20740 - coproporphyrinogen III oxidase, at 4,335,478 to 4,336,377 _RS20740 BWI76_RS20745: BWI76_RS20745 - AraC family transcriptional regulator, at 4,336,511 to 4,337,563 _RS20745 Position (kb) 4335 4336 4337Strain fitness (log2 ratio) -3 -2 -1 0 1at 4334.572 kb on - strand, within BWI76_RS20730at 4334.904 kb on + strand, within BWI76_RS20735at 4334.945 kb on - strand, within BWI76_RS20735at 4335.154 kb on - strand, within BWI76_RS20735at 4335.331 kb on - strand, within BWI76_RS20735at 4335.498 kb on + strandat 4335.498 kb on + strandat 4335.710 kb on + strand, within BWI76_RS20740at 4335.723 kb on - strand, within BWI76_RS20740at 4335.781 kb on - strand, within BWI76_RS20740at 4335.938 kb on - strand, within BWI76_RS20740at 4335.982 kb on + strand, within BWI76_RS20740at 4336.155 kb on - strand, within BWI76_RS20740at 4336.544 kb on - strandat 4336.633 kb on - strand, within BWI76_RS20745at 4336.656 kb on - strand, within BWI76_RS20745at 4336.663 kb on + strand, within BWI76_RS20745at 4336.788 kb on - strand, within BWI76_RS20745at 4336.818 kb on + strand, within BWI76_RS20745at 4336.935 kb on - strand, within BWI76_RS20745at 4337.033 kb on - strand, within BWI76_RS20745at 4337.147 kb on - strand, within BWI76_RS20745at 4337.148 kb on - strand, within BWI76_RS20745at 4337.296 kb on + strand, within BWI76_RS20745

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,334,572 - BWI76_RS20730 0.80 +0.3
4,334,904 + BWI76_RS20735 0.34 +1.2
4,334,945 - BWI76_RS20735 0.39 +0.1
4,335,154 - BWI76_RS20735 0.63 +0.7
4,335,331 - BWI76_RS20735 0.83 -2.4
4,335,498 + -1.0
4,335,498 + -1.7
4,335,710 + BWI76_RS20740 0.26 -1.2
4,335,723 - BWI76_RS20740 0.27 -1.6
4,335,781 - BWI76_RS20740 0.34 -2.9
4,335,938 - BWI76_RS20740 0.51 -3.1
4,335,982 + BWI76_RS20740 0.56 +0.4
4,336,155 - BWI76_RS20740 0.75 -2.4
4,336,544 - -0.7
4,336,633 - BWI76_RS20745 0.12 -1.2
4,336,656 - BWI76_RS20745 0.14 -0.7
4,336,663 + BWI76_RS20745 0.14 +0.3
4,336,788 - BWI76_RS20745 0.26 +0.3
4,336,818 + BWI76_RS20745 0.29 -0.3
4,336,935 - BWI76_RS20745 0.40 -0.6
4,337,033 - BWI76_RS20745 0.50 -0.1
4,337,147 - BWI76_RS20745 0.60 -0.2
4,337,148 - BWI76_RS20745 0.60 +0.2
4,337,296 + BWI76_RS20745 0.75 -1.6

Or see this region's nucleotide sequence