Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19900

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19895 and BWI76_RS19900 are separated by 72 nucleotidesBWI76_RS19900 and BWI76_RS19905 are separated by 102 nucleotides BWI76_RS19895: BWI76_RS19895 - bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase, at 4,160,763 to 4,161,827 _RS19895 BWI76_RS19900: BWI76_RS19900 - FAD:protein FMN transferase, at 4,161,900 to 4,162,952 _RS19900 BWI76_RS19905: BWI76_RS19905 - OmpK36 porin, at 4,163,055 to 4,164,173 _RS19905 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -2 -1 0 1 2at 4161.169 kb on + strand, within BWI76_RS19895at 4161.170 kb on - strand, within BWI76_RS19895at 4161.170 kb on - strand, within BWI76_RS19895at 4162.324 kb on + strand, within BWI76_RS19900at 4162.446 kb on + strand, within BWI76_RS19900at 4162.783 kb on + strand, within BWI76_RS19900at 4162.783 kb on + strand, within BWI76_RS19900at 4162.791 kb on - strand, within BWI76_RS19900at 4162.793 kb on + strand, within BWI76_RS19900at 4162.882 kb on - strandat 4162.923 kb on - strandat 4162.983 kb on - strandat 4162.983 kb on - strandat 4163.006 kb on - strandat 4163.761 kb on - strand, within BWI76_RS19905at 4163.897 kb on + strand, within BWI76_RS19905at 4163.898 kb on - strand, within BWI76_RS19905

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,161,169 + BWI76_RS19895 0.38 -1.5
4,161,170 - BWI76_RS19895 0.38 +0.2
4,161,170 - BWI76_RS19895 0.38 +0.1
4,162,324 + BWI76_RS19900 0.40 +0.3
4,162,446 + BWI76_RS19900 0.52 -2.6
4,162,783 + BWI76_RS19900 0.84 -2.0
4,162,783 + BWI76_RS19900 0.84 +0.2
4,162,791 - BWI76_RS19900 0.85 +1.0
4,162,793 + BWI76_RS19900 0.85 -1.4
4,162,882 - -1.8
4,162,923 - -1.6
4,162,983 - +1.8
4,162,983 - +0.0
4,163,006 - +2.2
4,163,761 - BWI76_RS19905 0.63 -1.7
4,163,897 + BWI76_RS19905 0.75 +0.0
4,163,898 - BWI76_RS19905 0.75 -1.1

Or see this region's nucleotide sequence