Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19835 and BWI76_RS19840 are separated by 179 nucleotides BWI76_RS19840 and BWI76_RS19845 are separated by 19 nucleotides BWI76_RS19845 and BWI76_RS19850 are separated by 77 nucleotides BWI76_RS19850 and BWI76_RS19855 are separated by 178 nucleotides
BWI76_RS19835: BWI76_RS19835 - nucleoid-associated protein YejK, at 4,147,676 to 4,148,683
_RS19835
BWI76_RS19840: BWI76_RS19840 - hypothetical protein, at 4,148,863 to 4,149,090
_RS19840
BWI76_RS19845: BWI76_RS19845 - phosphatase, at 4,149,110 to 4,150,870
_RS19845
BWI76_RS19850: BWI76_RS19850 - tRNA-Pro, at 4,150,948 to 4,151,024
_RS19850
BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309
_RS19855
Position (kb) 4149
4150
4151 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4148.466 kb on + strand, within BWI76_RS19835 at 4148.466 kb on + strand, within BWI76_RS19835 at 4148.474 kb on - strand, within BWI76_RS19835 at 4148.829 kb on - strand at 4148.885 kb on + strand at 4148.948 kb on + strand, within BWI76_RS19840 at 4149.685 kb on + strand, within BWI76_RS19845 at 4149.976 kb on + strand, within BWI76_RS19845 at 4149.999 kb on + strand, within BWI76_RS19845 at 4150.352 kb on + strand, within BWI76_RS19845 at 4150.429 kb on + strand, within BWI76_RS19845 at 4150.603 kb on + strand, within BWI76_RS19845 at 4150.661 kb on - strand, within BWI76_RS19845 at 4150.717 kb on + strand at 4150.970 kb on - strand, within BWI76_RS19850 at 4150.970 kb on - strand, within BWI76_RS19850 at 4150.977 kb on + strand, within BWI76_RS19850 at 4151.335 kb on - strand, within BWI76_RS19855 at 4151.335 kb on - strand, within BWI76_RS19855 at 4151.447 kb on - strand, within BWI76_RS19855 at 4151.480 kb on + strand, within BWI76_RS19855 at 4151.513 kb on - strand, within BWI76_RS19855 at 4151.622 kb on + strand, within BWI76_RS19855
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,148,466 + BWI76_RS19835 0.78 -1.3 4,148,466 + BWI76_RS19835 0.78 -0.5 4,148,474 - BWI76_RS19835 0.79 +0.4 4,148,829 - -0.8 4,148,885 + -0.0 4,148,948 + BWI76_RS19840 0.37 -0.5 4,149,685 + BWI76_RS19845 0.33 -1.1 4,149,976 + BWI76_RS19845 0.49 -3.8 4,149,999 + BWI76_RS19845 0.50 -3.5 4,150,352 + BWI76_RS19845 0.71 -2.0 4,150,429 + BWI76_RS19845 0.75 -1.8 4,150,603 + BWI76_RS19845 0.85 -1.2 4,150,661 - BWI76_RS19845 0.88 -0.6 4,150,717 + -0.1 4,150,970 - BWI76_RS19850 0.29 -2.8 4,150,970 - BWI76_RS19850 0.29 -0.2 4,150,977 + BWI76_RS19850 0.38 +0.1 4,151,335 - BWI76_RS19855 0.12 +0.0 4,151,335 - BWI76_RS19855 0.12 +0.8 4,151,447 - BWI76_RS19855 0.22 -0.4 4,151,480 + BWI76_RS19855 0.25 -2.0 4,151,513 - BWI76_RS19855 0.28 +0.0 4,151,622 + BWI76_RS19855 0.38 +0.7
Or see this region's nucleotide sequence