Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19845

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19835 and BWI76_RS19840 are separated by 179 nucleotidesBWI76_RS19840 and BWI76_RS19845 are separated by 19 nucleotidesBWI76_RS19845 and BWI76_RS19850 are separated by 77 nucleotidesBWI76_RS19850 and BWI76_RS19855 are separated by 178 nucleotides BWI76_RS19835: BWI76_RS19835 - nucleoid-associated protein YejK, at 4,147,676 to 4,148,683 _RS19835 BWI76_RS19840: BWI76_RS19840 - hypothetical protein, at 4,148,863 to 4,149,090 _RS19840 BWI76_RS19845: BWI76_RS19845 - phosphatase, at 4,149,110 to 4,150,870 _RS19845 BWI76_RS19850: BWI76_RS19850 - tRNA-Pro, at 4,150,948 to 4,151,024 _RS19850 BWI76_RS19855: BWI76_RS19855 - AI-2E family transporter, at 4,151,203 to 4,152,309 _RS19855 Position (kb) 4149 4150 4151Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4148.466 kb on + strand, within BWI76_RS19835at 4148.466 kb on + strand, within BWI76_RS19835at 4148.474 kb on - strand, within BWI76_RS19835at 4148.829 kb on - strandat 4148.885 kb on + strandat 4148.948 kb on + strand, within BWI76_RS19840at 4149.685 kb on + strand, within BWI76_RS19845at 4149.976 kb on + strand, within BWI76_RS19845at 4149.999 kb on + strand, within BWI76_RS19845at 4150.352 kb on + strand, within BWI76_RS19845at 4150.429 kb on + strand, within BWI76_RS19845at 4150.603 kb on + strand, within BWI76_RS19845at 4150.661 kb on - strand, within BWI76_RS19845at 4150.717 kb on + strandat 4150.970 kb on - strand, within BWI76_RS19850at 4150.970 kb on - strand, within BWI76_RS19850at 4150.977 kb on + strand, within BWI76_RS19850at 4151.335 kb on - strand, within BWI76_RS19855at 4151.335 kb on - strand, within BWI76_RS19855at 4151.447 kb on - strand, within BWI76_RS19855at 4151.480 kb on + strand, within BWI76_RS19855at 4151.513 kb on - strand, within BWI76_RS19855at 4151.622 kb on + strand, within BWI76_RS19855

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,148,466 + BWI76_RS19835 0.78 -1.3
4,148,466 + BWI76_RS19835 0.78 -0.5
4,148,474 - BWI76_RS19835 0.79 +0.4
4,148,829 - -0.8
4,148,885 + -0.0
4,148,948 + BWI76_RS19840 0.37 -0.5
4,149,685 + BWI76_RS19845 0.33 -1.1
4,149,976 + BWI76_RS19845 0.49 -3.8
4,149,999 + BWI76_RS19845 0.50 -3.5
4,150,352 + BWI76_RS19845 0.71 -2.0
4,150,429 + BWI76_RS19845 0.75 -1.8
4,150,603 + BWI76_RS19845 0.85 -1.2
4,150,661 - BWI76_RS19845 0.88 -0.6
4,150,717 + -0.1
4,150,970 - BWI76_RS19850 0.29 -2.8
4,150,970 - BWI76_RS19850 0.29 -0.2
4,150,977 + BWI76_RS19850 0.38 +0.1
4,151,335 - BWI76_RS19855 0.12 +0.0
4,151,335 - BWI76_RS19855 0.12 +0.8
4,151,447 - BWI76_RS19855 0.22 -0.4
4,151,480 + BWI76_RS19855 0.25 -2.0
4,151,513 - BWI76_RS19855 0.28 +0.0
4,151,622 + BWI76_RS19855 0.38 +0.7

Or see this region's nucleotide sequence