Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19715

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19710 and BWI76_RS19715 are separated by 95 nucleotidesBWI76_RS19715 and BWI76_RS19720 overlap by 8 nucleotides BWI76_RS19710: BWI76_RS19710 - NupC/NupG family nucleoside CNT transporter, at 4,119,427 to 4,120,677 _RS19710 BWI76_RS19715: BWI76_RS19715 - pseudouridine-5'-phosphate glycosidase, at 4,120,773 to 4,121,708 _RS19715 BWI76_RS19720: BWI76_RS19720 - pseudouridine kinase, at 4,121,701 to 4,122,636 _RS19720 Position (kb) 4120 4121 4122Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 4119.813 kb on + strand, within BWI76_RS19710at 4120.020 kb on + strand, within BWI76_RS19710at 4120.572 kb on + strandat 4120.646 kb on + strandat 4120.659 kb on - strandat 4120.712 kb on + strandat 4120.777 kb on - strandat 4120.832 kb on - strandat 4121.025 kb on + strand, within BWI76_RS19715at 4121.068 kb on + strand, within BWI76_RS19715at 4121.069 kb on - strand, within BWI76_RS19715at 4121.074 kb on + strand, within BWI76_RS19715at 4121.079 kb on + strand, within BWI76_RS19715at 4121.084 kb on + strand, within BWI76_RS19715at 4121.085 kb on - strand, within BWI76_RS19715at 4121.087 kb on - strand, within BWI76_RS19715at 4121.096 kb on + strand, within BWI76_RS19715at 4121.116 kb on - strand, within BWI76_RS19715at 4121.132 kb on + strand, within BWI76_RS19715at 4121.140 kb on - strand, within BWI76_RS19715at 4121.162 kb on + strand, within BWI76_RS19715at 4121.163 kb on + strand, within BWI76_RS19715at 4121.170 kb on - strand, within BWI76_RS19715at 4121.221 kb on + strand, within BWI76_RS19715at 4121.229 kb on - strand, within BWI76_RS19715at 4121.229 kb on - strand, within BWI76_RS19715at 4121.229 kb on - strand, within BWI76_RS19715at 4121.229 kb on - strand, within BWI76_RS19715at 4121.229 kb on - strand, within BWI76_RS19715at 4121.231 kb on + strand, within BWI76_RS19715at 4121.239 kb on - strand, within BWI76_RS19715at 4121.239 kb on - strand, within BWI76_RS19715at 4121.239 kb on - strand, within BWI76_RS19715at 4121.255 kb on + strand, within BWI76_RS19715at 4121.298 kb on - strand, within BWI76_RS19715at 4121.298 kb on - strand, within BWI76_RS19715at 4121.298 kb on - strand, within BWI76_RS19715at 4121.300 kb on - strand, within BWI76_RS19715at 4121.305 kb on - strand, within BWI76_RS19715at 4121.308 kb on - strand, within BWI76_RS19715at 4121.338 kb on - strand, within BWI76_RS19715at 4121.367 kb on + strand, within BWI76_RS19715at 4121.374 kb on - strand, within BWI76_RS19715at 4121.374 kb on - strand, within BWI76_RS19715at 4121.375 kb on - strand, within BWI76_RS19715at 4121.375 kb on - strand, within BWI76_RS19715at 4121.385 kb on + strand, within BWI76_RS19715at 4121.385 kb on + strand, within BWI76_RS19715at 4121.437 kb on + strand, within BWI76_RS19715at 4121.437 kb on - strand, within BWI76_RS19715at 4121.439 kb on + strand, within BWI76_RS19715at 4121.439 kb on + strand, within BWI76_RS19715at 4121.439 kb on + strand, within BWI76_RS19715at 4121.439 kb on + strand, within BWI76_RS19715at 4121.439 kb on + strand, within BWI76_RS19715at 4121.439 kb on + strand, within BWI76_RS19715at 4121.445 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.447 kb on - strand, within BWI76_RS19715at 4121.452 kb on - strand, within BWI76_RS19715at 4121.462 kb on + strand, within BWI76_RS19715at 4121.462 kb on - strand, within BWI76_RS19715at 4121.470 kb on - strand, within BWI76_RS19715at 4121.486 kb on - strand, within BWI76_RS19715at 4121.486 kb on - strand, within BWI76_RS19715at 4121.486 kb on - strand, within BWI76_RS19715at 4121.533 kb on + strand, within BWI76_RS19715at 4121.557 kb on + strand, within BWI76_RS19715at 4121.589 kb on + strand, within BWI76_RS19715at 4121.590 kb on + strand, within BWI76_RS19715at 4121.611 kb on - strand, within BWI76_RS19715at 4121.712 kb on - strandat 4121.726 kb on - strandat 4121.745 kb on - strandat 4121.746 kb on - strandat 4121.747 kb on + strandat 4121.766 kb on + strandat 4121.781 kb on + strandat 4121.784 kb on + strandat 4121.787 kb on - strandat 4121.787 kb on - strandat 4121.792 kb on - strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.794 kb on + strandat 4121.797 kb on - strand, within BWI76_RS19720at 4121.797 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.802 kb on - strand, within BWI76_RS19720at 4121.804 kb on + strand, within BWI76_RS19720at 4121.804 kb on + strand, within BWI76_RS19720at 4121.806 kb on + strand, within BWI76_RS19720at 4121.812 kb on - strand, within BWI76_RS19720at 4121.832 kb on + strand, within BWI76_RS19720at 4121.840 kb on - strand, within BWI76_RS19720at 4121.848 kb on + strand, within BWI76_RS19720at 4121.855 kb on - strand, within BWI76_RS19720at 4121.915 kb on + strandat 4121.915 kb on + strand, within BWI76_RS19720at 4121.944 kb on + strand, within BWI76_RS19720at 4122.040 kb on - strand, within BWI76_RS19720at 4122.087 kb on + strand, within BWI76_RS19720at 4122.088 kb on + strand, within BWI76_RS19720at 4122.089 kb on - strand, within BWI76_RS19720at 4122.127 kb on + strand, within BWI76_RS19720at 4122.127 kb on + strand, within BWI76_RS19720at 4122.135 kb on - strand, within BWI76_RS19720at 4122.159 kb on + strand, within BWI76_RS19720at 4122.167 kb on - strand, within BWI76_RS19720at 4122.182 kb on + strand, within BWI76_RS19720at 4122.182 kb on + strand, within BWI76_RS19720at 4122.182 kb on + strand, within BWI76_RS19720at 4122.182 kb on + strand, within BWI76_RS19720at 4122.190 kb on - strand, within BWI76_RS19720at 4122.190 kb on - strand, within BWI76_RS19720at 4122.190 kb on - strand, within BWI76_RS19720at 4122.190 kb on - strand, within BWI76_RS19720at 4122.190 kb on - strand, within BWI76_RS19720at 4122.190 kb on - strand, within BWI76_RS19720at 4122.192 kb on + strand, within BWI76_RS19720at 4122.195 kb on - strand, within BWI76_RS19720at 4122.200 kb on - strand, within BWI76_RS19720at 4122.200 kb on - strand, within BWI76_RS19720at 4122.222 kb on - strand, within BWI76_RS19720at 4122.258 kb on + strand, within BWI76_RS19720at 4122.258 kb on + strand, within BWI76_RS19720at 4122.266 kb on - strand, within BWI76_RS19720at 4122.266 kb on - strand, within BWI76_RS19720at 4122.266 kb on - strand, within BWI76_RS19720at 4122.266 kb on - strand, within BWI76_RS19720at 4122.266 kb on - strand, within BWI76_RS19720at 4122.266 kb on - strand, within BWI76_RS19720at 4122.282 kb on + strand, within BWI76_RS19720at 4122.282 kb on + strandat 4122.339 kb on + strand, within BWI76_RS19720at 4122.348 kb on + strand, within BWI76_RS19720at 4122.365 kb on + strand, within BWI76_RS19720at 4122.372 kb on - strand, within BWI76_RS19720at 4122.395 kb on + strandat 4122.395 kb on + strand, within BWI76_RS19720at 4122.395 kb on + strand, within BWI76_RS19720at 4122.395 kb on + strand, within BWI76_RS19720at 4122.395 kb on + strand, within BWI76_RS19720at 4122.395 kb on + strand, within BWI76_RS19720at 4122.395 kb on + strand, within BWI76_RS19720at 4122.403 kb on - strandat 4122.403 kb on - strand, within BWI76_RS19720at 4122.403 kb on - strand, within BWI76_RS19720at 4122.403 kb on - strand, within BWI76_RS19720at 4122.403 kb on - strand, within BWI76_RS19720at 4122.403 kb on - strand, within BWI76_RS19720at 4122.404 kb on - strand, within BWI76_RS19720at 4122.404 kb on - strand, within BWI76_RS19720at 4122.404 kb on - strand, within BWI76_RS19720at 4122.404 kb on - strand, within BWI76_RS19720at 4122.404 kb on - strand, within BWI76_RS19720at 4122.462 kb on - strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.500 kb on + strand, within BWI76_RS19720at 4122.508 kb on - strand, within BWI76_RS19720at 4122.508 kb on - strand, within BWI76_RS19720at 4122.508 kb on - strand, within BWI76_RS19720at 4122.516 kb on - strand, within BWI76_RS19720at 4122.542 kb on + strand, within BWI76_RS19720at 4122.542 kb on + strand, within BWI76_RS19720at 4122.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,119,813 + BWI76_RS19710 0.31 -0.2
4,120,020 + BWI76_RS19710 0.47 +1.7
4,120,572 + +1.4
4,120,646 + -0.8
4,120,659 - +0.9
4,120,712 + -2.2
4,120,777 - -0.8
4,120,832 - -0.8
4,121,025 + BWI76_RS19715 0.27 +0.8
4,121,068 + BWI76_RS19715 0.32 +0.5
4,121,069 - BWI76_RS19715 0.32 +0.4
4,121,074 + BWI76_RS19715 0.32 +0.0
4,121,079 + BWI76_RS19715 0.33 +0.6
4,121,084 + BWI76_RS19715 0.33 +1.7
4,121,085 - BWI76_RS19715 0.33 +0.8
4,121,087 - BWI76_RS19715 0.34 -0.5
4,121,096 + BWI76_RS19715 0.35 -0.5
4,121,116 - BWI76_RS19715 0.37 -0.5
4,121,132 + BWI76_RS19715 0.38 +1.0
4,121,140 - BWI76_RS19715 0.39 -1.3
4,121,162 + BWI76_RS19715 0.42 +2.3
4,121,163 + BWI76_RS19715 0.42 -2.5
4,121,170 - BWI76_RS19715 0.42 +0.9
4,121,221 + BWI76_RS19715 0.48 -0.3
4,121,229 - BWI76_RS19715 0.49 +0.3
4,121,229 - BWI76_RS19715 0.49 +0.7
4,121,229 - BWI76_RS19715 0.49 -0.1
4,121,229 - BWI76_RS19715 0.49 +1.5
4,121,229 - BWI76_RS19715 0.49 -1.3
4,121,231 + BWI76_RS19715 0.49 -2.1
4,121,239 - BWI76_RS19715 0.50 -0.7
4,121,239 - BWI76_RS19715 0.50 +2.1
4,121,239 - BWI76_RS19715 0.50 +0.3
4,121,255 + BWI76_RS19715 0.51 +1.2
4,121,298 - BWI76_RS19715 0.56 -1.5
4,121,298 - BWI76_RS19715 0.56 +0.8
4,121,298 - BWI76_RS19715 0.56 -0.9
4,121,300 - BWI76_RS19715 0.56 +0.4
4,121,305 - BWI76_RS19715 0.57 -0.6
4,121,308 - BWI76_RS19715 0.57 -0.4
4,121,338 - BWI76_RS19715 0.60 +1.1
4,121,367 + BWI76_RS19715 0.63 +0.1
4,121,374 - BWI76_RS19715 0.64 -0.2
4,121,374 - BWI76_RS19715 0.64 -0.1
4,121,375 - BWI76_RS19715 0.64 -0.3
4,121,375 - BWI76_RS19715 0.64 +1.3
4,121,385 + BWI76_RS19715 0.65 +0.7
4,121,385 + BWI76_RS19715 0.65 -0.6
4,121,437 + BWI76_RS19715 0.71 -1.0
4,121,437 - BWI76_RS19715 0.71 +0.8
4,121,439 + BWI76_RS19715 0.71 +1.4
4,121,439 + BWI76_RS19715 0.71 +0.5
4,121,439 + BWI76_RS19715 0.71 +1.2
4,121,439 + BWI76_RS19715 0.71 -0.3
4,121,439 + BWI76_RS19715 0.71 +0.1
4,121,439 + BWI76_RS19715 0.71 +0.2
4,121,445 - BWI76_RS19715 0.72 +1.0
4,121,447 - BWI76_RS19715 0.72 +3.1
4,121,447 - BWI76_RS19715 0.72 -3.1
4,121,447 - BWI76_RS19715 0.72 +0.4
4,121,447 - BWI76_RS19715 0.72 -0.5
4,121,447 - BWI76_RS19715 0.72 -2.6
4,121,447 - BWI76_RS19715 0.72 -2.2
4,121,447 - BWI76_RS19715 0.72 -0.5
4,121,447 - BWI76_RS19715 0.72 +0.6
4,121,447 - BWI76_RS19715 0.72 -0.6
4,121,452 - BWI76_RS19715 0.73 +1.4
4,121,462 + BWI76_RS19715 0.74 -2.5
4,121,462 - BWI76_RS19715 0.74 +0.2
4,121,470 - BWI76_RS19715 0.74 +0.1
4,121,486 - BWI76_RS19715 0.76 -0.8
4,121,486 - BWI76_RS19715 0.76 +0.8
4,121,486 - BWI76_RS19715 0.76 -1.3
4,121,533 + BWI76_RS19715 0.81 -0.1
4,121,557 + BWI76_RS19715 0.84 -1.5
4,121,589 + BWI76_RS19715 0.87 +0.7
4,121,590 + BWI76_RS19715 0.87 -1.7
4,121,611 - BWI76_RS19715 0.90 -0.1
4,121,712 - -0.8
4,121,726 - +0.4
4,121,745 - +0.5
4,121,746 - +0.2
4,121,747 + +0.9
4,121,766 + +0.1
4,121,781 + +0.7
4,121,784 + +1.9
4,121,787 - -0.1
4,121,787 - +2.1
4,121,792 - -0.0
4,121,794 + -0.6
4,121,794 + -1.0
4,121,794 + -2.0
4,121,794 + -0.2
4,121,794 + -0.7
4,121,794 + +0.4
4,121,794 + -0.9
4,121,794 + -0.6
4,121,797 - BWI76_RS19720 0.10 +1.1
4,121,797 - BWI76_RS19720 0.10 +0.3
4,121,802 - BWI76_RS19720 0.11 +4.8
4,121,802 - BWI76_RS19720 0.11 +0.1
4,121,802 - BWI76_RS19720 0.11 -0.2
4,121,802 - BWI76_RS19720 0.11 +0.9
4,121,802 - BWI76_RS19720 0.11 +0.5
4,121,802 - BWI76_RS19720 0.11 -0.7
4,121,802 - BWI76_RS19720 0.11 +0.1
4,121,804 + BWI76_RS19720 0.11 -0.8
4,121,804 + BWI76_RS19720 0.11 -0.6
4,121,806 + BWI76_RS19720 0.11 -0.6
4,121,812 - BWI76_RS19720 0.12 -1.5
4,121,832 + BWI76_RS19720 0.14 -0.3
4,121,840 - BWI76_RS19720 0.15 -2.0
4,121,848 + BWI76_RS19720 0.16 -2.7
4,121,855 - BWI76_RS19720 0.16 -1.5
4,121,915 + +0.5
4,121,915 + BWI76_RS19720 0.23 -1.3
4,121,944 + BWI76_RS19720 0.26 -0.9
4,122,040 - BWI76_RS19720 0.36 -0.4
4,122,087 + BWI76_RS19720 0.41 -0.9
4,122,088 + BWI76_RS19720 0.41 -0.3
4,122,089 - BWI76_RS19720 0.41 -0.7
4,122,127 + BWI76_RS19720 0.46 -0.6
4,122,127 + BWI76_RS19720 0.46 -1.6
4,122,135 - BWI76_RS19720 0.46 -0.9
4,122,159 + BWI76_RS19720 0.49 +1.1
4,122,167 - BWI76_RS19720 0.50 +0.6
4,122,182 + BWI76_RS19720 0.51 -0.4
4,122,182 + BWI76_RS19720 0.51 +0.7
4,122,182 + BWI76_RS19720 0.51 +0.1
4,122,182 + BWI76_RS19720 0.51 -1.4
4,122,190 - BWI76_RS19720 0.52 +1.4
4,122,190 - BWI76_RS19720 0.52 -0.2
4,122,190 - BWI76_RS19720 0.52 +0.8
4,122,190 - BWI76_RS19720 0.52 -0.4
4,122,190 - BWI76_RS19720 0.52 +0.6
4,122,190 - BWI76_RS19720 0.52 -0.1
4,122,192 + BWI76_RS19720 0.52 -0.4
4,122,195 - BWI76_RS19720 0.53 -0.9
4,122,200 - BWI76_RS19720 0.53 -1.5
4,122,200 - BWI76_RS19720 0.53 -0.6
4,122,222 - BWI76_RS19720 0.56 -0.8
4,122,258 + BWI76_RS19720 0.60 -0.7
4,122,258 + BWI76_RS19720 0.60 +1.0
4,122,266 - BWI76_RS19720 0.60 -1.3
4,122,266 - BWI76_RS19720 0.60 -0.7
4,122,266 - BWI76_RS19720 0.60 +0.4
4,122,266 - BWI76_RS19720 0.60 +0.7
4,122,266 - BWI76_RS19720 0.60 -9.0
4,122,266 - BWI76_RS19720 0.60 -0.5
4,122,282 + BWI76_RS19720 0.62 +1.5
4,122,282 + +1.6
4,122,339 + BWI76_RS19720 0.68 -1.1
4,122,348 + BWI76_RS19720 0.69 -1.5
4,122,365 + BWI76_RS19720 0.71 +1.4
4,122,372 - BWI76_RS19720 0.72 +0.5
4,122,395 + -0.7
4,122,395 + BWI76_RS19720 0.74 -2.7
4,122,395 + BWI76_RS19720 0.74 +1.4
4,122,395 + BWI76_RS19720 0.74 -2.2
4,122,395 + BWI76_RS19720 0.74 +0.9
4,122,395 + BWI76_RS19720 0.74 +2.7
4,122,395 + BWI76_RS19720 0.74 +1.0
4,122,403 - +1.5
4,122,403 - BWI76_RS19720 0.75 -1.8
4,122,403 - BWI76_RS19720 0.75 +0.3
4,122,403 - BWI76_RS19720 0.75 +0.4
4,122,403 - BWI76_RS19720 0.75 +0.4
4,122,403 - BWI76_RS19720 0.75 +1.4
4,122,404 - BWI76_RS19720 0.75 -0.9
4,122,404 - BWI76_RS19720 0.75 -1.3
4,122,404 - BWI76_RS19720 0.75 -1.0
4,122,404 - BWI76_RS19720 0.75 -0.2
4,122,404 - BWI76_RS19720 0.75 -0.1
4,122,462 - BWI76_RS19720 0.81 -0.7
4,122,500 + BWI76_RS19720 0.85 -0.9
4,122,500 + BWI76_RS19720 0.85 +1.0
4,122,500 + BWI76_RS19720 0.85 -2.2
4,122,500 + BWI76_RS19720 0.85 -1.6
4,122,500 + BWI76_RS19720 0.85 -2.1
4,122,500 + BWI76_RS19720 0.85 +2.2
4,122,500 + BWI76_RS19720 0.85 -0.6
4,122,508 - BWI76_RS19720 0.86 +0.5
4,122,508 - BWI76_RS19720 0.86 -1.8
4,122,508 - BWI76_RS19720 0.86 -0.5
4,122,516 - BWI76_RS19720 0.87 -0.5
4,122,542 + BWI76_RS19720 0.90 +0.4
4,122,542 + BWI76_RS19720 0.90 -0.8
4,122,558 + -0.9

Or see this region's nucleotide sequence