Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19600 and BWI76_RS19605 overlap by 4 nucleotides BWI76_RS19605 and BWI76_RS19610 are separated by 127 nucleotides BWI76_RS19610 and BWI76_RS19615 are separated by 124 nucleotides BWI76_RS19615 and BWI76_RS19620 are separated by 82 nucleotides
BWI76_RS19600: BWI76_RS19600 - hypothetical protein, at 4,097,944 to 4,098,342
_RS19600
BWI76_RS19605: BWI76_RS19605 - CidB/LrgB family autolysis modulator, at 4,098,339 to 4,099,034
_RS19605
BWI76_RS19610: BWI76_RS19610 - Cytidine deaminase (EC 3.5.4.5) <small>(from data)</small>, at 4,099,162 to 4,100,046
_RS19610
BWI76_RS19615: BWI76_RS19615 - vancomycin high temperature exclusion protein, at 4,100,171 to 4,100,887
_RS19615
BWI76_RS19620: BWI76_RS19620 - hypothetical protein, at 4,100,970 to 4,101,629
_RS19620
Position (kb) 4099
4100
4101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4098.227 kb on - strand, within BWI76_RS19600 at 4098.240 kb on - strand, within BWI76_RS19600 at 4098.264 kb on - strand, within BWI76_RS19600 at 4098.353 kb on + strand at 4098.452 kb on + strand, within BWI76_RS19605 at 4098.544 kb on - strand, within BWI76_RS19605 at 4098.746 kb on + strand, within BWI76_RS19605 at 4098.841 kb on - strand, within BWI76_RS19605 at 4098.854 kb on + strand, within BWI76_RS19605 at 4098.875 kb on + strand, within BWI76_RS19605 at 4099.183 kb on + strand at 4099.257 kb on + strand, within BWI76_RS19610 at 4099.486 kb on + strand, within BWI76_RS19610 at 4099.495 kb on - strand, within BWI76_RS19610 at 4099.535 kb on + strand, within BWI76_RS19610 at 4099.536 kb on + strand, within BWI76_RS19610 at 4099.593 kb on - strand, within BWI76_RS19610 at 4099.674 kb on + strand, within BWI76_RS19610 at 4100.043 kb on - strand at 4100.075 kb on - strand at 4100.335 kb on + strand, within BWI76_RS19615 at 4100.396 kb on + strand, within BWI76_RS19615 at 4100.665 kb on + strand, within BWI76_RS19615 at 4100.830 kb on + strand at 4100.830 kb on + strand at 4100.830 kb on + strand at 4100.998 kb on - strand at 4101.014 kb on + strand at 4101.042 kb on - strand, within BWI76_RS19620
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,098,227 - BWI76_RS19600 0.71 -0.4 4,098,240 - BWI76_RS19600 0.74 +0.3 4,098,264 - BWI76_RS19600 0.80 -0.2 4,098,353 + -1.1 4,098,452 + BWI76_RS19605 0.16 +0.2 4,098,544 - BWI76_RS19605 0.29 -1.4 4,098,746 + BWI76_RS19605 0.58 -0.1 4,098,841 - BWI76_RS19605 0.72 -0.8 4,098,854 + BWI76_RS19605 0.74 -1.1 4,098,875 + BWI76_RS19605 0.77 +0.4 4,099,183 + -1.0 4,099,257 + BWI76_RS19610 0.11 -0.5 4,099,486 + BWI76_RS19610 0.37 +0.5 4,099,495 - BWI76_RS19610 0.38 -0.0 4,099,535 + BWI76_RS19610 0.42 -0.7 4,099,536 + BWI76_RS19610 0.42 +3.2 4,099,593 - BWI76_RS19610 0.49 +0.4 4,099,674 + BWI76_RS19610 0.58 +0.4 4,100,043 - -0.4 4,100,075 - -0.3 4,100,335 + BWI76_RS19615 0.23 -1.1 4,100,396 + BWI76_RS19615 0.31 -2.0 4,100,665 + BWI76_RS19615 0.69 +0.1 4,100,830 + -0.0 4,100,830 + -0.5 4,100,830 + -0.6 4,100,998 - -1.0 4,101,014 + -0.9 4,101,042 - BWI76_RS19620 0.11 +0.1
Or see this region's nucleotide sequence