Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19050

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19045 and BWI76_RS19050 are separated by 317 nucleotidesBWI76_RS19050 and BWI76_RS19055 overlap by 4 nucleotidesBWI76_RS19055 and BWI76_RS19060 are separated by 2 nucleotides BWI76_RS19045: BWI76_RS19045 - capsular polysaccharide biosynthesis protein, at 3,955,385 to 3,956,353 _RS19045 BWI76_RS19050: BWI76_RS19050 - NAD(P)-dependent oxidoreductase, at 3,956,671 to 3,957,525 _RS19050 BWI76_RS19055: BWI76_RS19055 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,957,522 to 3,958,058 _RS19055 BWI76_RS19060: BWI76_RS19060 - glucose-1-phosphate thymidylyltransferase, at 3,958,061 to 3,958,930 _RS19060 Position (kb) 3956 3957 3958Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 3955.673 kb on - strand, within BWI76_RS19045at 3955.800 kb on - strand, within BWI76_RS19045at 3955.800 kb on - strand, within BWI76_RS19045at 3955.810 kb on - strand, within BWI76_RS19045at 3955.810 kb on - strand, within BWI76_RS19045at 3955.810 kb on - strand, within BWI76_RS19045at 3955.948 kb on - strand, within BWI76_RS19045at 3955.967 kb on - strand, within BWI76_RS19045at 3956.156 kb on - strand, within BWI76_RS19045at 3956.169 kb on - strand, within BWI76_RS19045at 3956.169 kb on - strand, within BWI76_RS19045at 3956.286 kb on - strandat 3956.552 kb on - strandat 3956.578 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.677 kb on - strandat 3956.712 kb on - strandat 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.757 kb on - strand, within BWI76_RS19050at 3956.788 kb on - strand, within BWI76_RS19050at 3956.794 kb on - strand, within BWI76_RS19050at 3956.794 kb on - strand, within BWI76_RS19050at 3956.815 kb on - strand, within BWI76_RS19050at 3956.815 kb on - strand, within BWI76_RS19050at 3956.970 kb on - strand, within BWI76_RS19050at 3956.979 kb on - strand, within BWI76_RS19050at 3956.979 kb on - strand, within BWI76_RS19050at 3956.985 kb on - strand, within BWI76_RS19050at 3956.989 kb on - strand, within BWI76_RS19050at 3957.040 kb on - strand, within BWI76_RS19050at 3957.040 kb on - strand, within BWI76_RS19050at 3957.047 kb on - strand, within BWI76_RS19050at 3957.206 kb on - strandat 3957.251 kb on - strand, within BWI76_RS19050at 3957.331 kb on - strand, within BWI76_RS19050at 3957.434 kb on - strand, within BWI76_RS19050at 3957.489 kb on - strandat 3957.489 kb on - strandat 3957.517 kb on - strandat 3957.544 kb on - strandat 3957.561 kb on - strandat 3957.656 kb on - strand, within BWI76_RS19055at 3957.695 kb on - strand, within BWI76_RS19055at 3957.722 kb on - strand, within BWI76_RS19055at 3957.722 kb on - strand, within BWI76_RS19055at 3957.732 kb on - strand, within BWI76_RS19055at 3957.764 kb on - strand, within BWI76_RS19055at 3957.829 kb on - strand, within BWI76_RS19055at 3957.843 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.852 kb on - strand, within BWI76_RS19055at 3957.888 kb on - strand, within BWI76_RS19055at 3957.909 kb on - strand, within BWI76_RS19055at 3957.909 kb on - strand, within BWI76_RS19055at 3957.990 kb on - strand, within BWI76_RS19055at 3958.008 kb on - strandat 3958.087 kb on - strandat 3958.124 kb on - strandat 3958.135 kb on - strandat 3958.148 kb on - strand, within BWI76_RS19060at 3958.156 kb on - strand, within BWI76_RS19060at 3958.173 kb on - strand, within BWI76_RS19060at 3958.173 kb on - strand, within BWI76_RS19060at 3958.173 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.182 kb on - strand, within BWI76_RS19060at 3958.215 kb on - strand, within BWI76_RS19060at 3958.215 kb on - strand, within BWI76_RS19060at 3958.215 kb on - strand, within BWI76_RS19060at 3958.215 kb on - strand, within BWI76_RS19060at 3958.228 kb on - strand, within BWI76_RS19060at 3958.228 kb on - strand, within BWI76_RS19060at 3958.247 kb on - strand, within BWI76_RS19060at 3958.252 kb on - strand, within BWI76_RS19060at 3958.252 kb on - strand, within BWI76_RS19060at 3958.252 kb on - strand, within BWI76_RS19060at 3958.252 kb on - strand, within BWI76_RS19060at 3958.268 kb on - strand, within BWI76_RS19060at 3958.268 kb on - strand, within BWI76_RS19060at 3958.268 kb on - strand, within BWI76_RS19060at 3958.268 kb on - strand, within BWI76_RS19060at 3958.278 kb on - strand, within BWI76_RS19060at 3958.315 kb on - strand, within BWI76_RS19060at 3958.315 kb on - strand, within BWI76_RS19060at 3958.365 kb on - strand, within BWI76_RS19060at 3958.374 kb on - strand, within BWI76_RS19060at 3958.374 kb on - strand, within BWI76_RS19060at 3958.374 kb on - strand, within BWI76_RS19060at 3958.412 kb on - strand, within BWI76_RS19060at 3958.428 kb on - strand, within BWI76_RS19060at 3958.506 kb on - strand, within BWI76_RS19060at 3958.515 kb on - strand, within BWI76_RS19060

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,955,673 - BWI76_RS19045 0.30 -3.8
3,955,800 - BWI76_RS19045 0.43 -2.2
3,955,800 - BWI76_RS19045 0.43 -4.2
3,955,810 - BWI76_RS19045 0.44 -2.8
3,955,810 - BWI76_RS19045 0.44 -4.9
3,955,810 - BWI76_RS19045 0.44 -4.1
3,955,948 - BWI76_RS19045 0.58 -2.1
3,955,967 - BWI76_RS19045 0.60 -3.5
3,956,156 - BWI76_RS19045 0.80 -3.7
3,956,169 - BWI76_RS19045 0.81 -2.9
3,956,169 - BWI76_RS19045 0.81 -0.9
3,956,286 - -5.4
3,956,552 - -0.2
3,956,578 - +2.1
3,956,677 - -0.4
3,956,677 - +0.2
3,956,677 - -1.6
3,956,677 - +0.8
3,956,677 - -0.2
3,956,677 - +0.6
3,956,677 - +0.2
3,956,677 - -0.8
3,956,712 - -5.7
3,956,757 - BWI76_RS19050 0.10 -1.2
3,956,757 - BWI76_RS19050 0.10 -3.7
3,956,757 - BWI76_RS19050 0.10 -4.8
3,956,757 - BWI76_RS19050 0.10 -5.3
3,956,757 - BWI76_RS19050 0.10 -3.7
3,956,757 - BWI76_RS19050 0.10 -2.7
3,956,757 - BWI76_RS19050 0.10 -3.9
3,956,757 - BWI76_RS19050 0.10 -4.2
3,956,757 - BWI76_RS19050 0.10 -4.9
3,956,757 - BWI76_RS19050 0.10 -2.0
3,956,788 - BWI76_RS19050 0.14 -5.1
3,956,794 - BWI76_RS19050 0.14 -2.9
3,956,794 - BWI76_RS19050 0.14 -3.9
3,956,815 - BWI76_RS19050 0.17 -2.8
3,956,815 - BWI76_RS19050 0.17 -0.6
3,956,970 - BWI76_RS19050 0.35 -4.0
3,956,979 - BWI76_RS19050 0.36 -1.5
3,956,979 - BWI76_RS19050 0.36 -4.6
3,956,985 - BWI76_RS19050 0.37 -5.3
3,956,989 - BWI76_RS19050 0.37 -4.6
3,957,040 - BWI76_RS19050 0.43 -1.4
3,957,040 - BWI76_RS19050 0.43 -3.4
3,957,047 - BWI76_RS19050 0.44 -3.8
3,957,206 - +0.1
3,957,251 - BWI76_RS19050 0.68 -3.7
3,957,331 - BWI76_RS19050 0.77 -0.3
3,957,434 - BWI76_RS19050 0.89 -3.8
3,957,489 - -0.4
3,957,489 - -3.3
3,957,517 - -0.7
3,957,544 - -0.5
3,957,561 - -2.3
3,957,656 - BWI76_RS19055 0.25 -4.5
3,957,695 - BWI76_RS19055 0.32 -4.2
3,957,722 - BWI76_RS19055 0.37 -5.1
3,957,722 - BWI76_RS19055 0.37 -3.9
3,957,732 - BWI76_RS19055 0.39 -4.1
3,957,764 - BWI76_RS19055 0.45 -5.8
3,957,829 - BWI76_RS19055 0.57 -1.7
3,957,843 - BWI76_RS19055 0.60 -3.9
3,957,852 - BWI76_RS19055 0.61 -4.2
3,957,852 - BWI76_RS19055 0.61 -4.9
3,957,852 - BWI76_RS19055 0.61 -3.4
3,957,852 - BWI76_RS19055 0.61 -5.4
3,957,852 - BWI76_RS19055 0.61 -3.1
3,957,852 - BWI76_RS19055 0.61 -3.6
3,957,852 - BWI76_RS19055 0.61 -3.3
3,957,852 - BWI76_RS19055 0.61 -2.4
3,957,852 - BWI76_RS19055 0.61 -2.6
3,957,852 - BWI76_RS19055 0.61 -4.3
3,957,888 - BWI76_RS19055 0.68 -3.8
3,957,909 - BWI76_RS19055 0.72 -3.1
3,957,909 - BWI76_RS19055 0.72 -3.1
3,957,990 - BWI76_RS19055 0.87 -5.0
3,958,008 - -1.6
3,958,087 - -2.4
3,958,124 - -6.4
3,958,135 - -5.7
3,958,148 - BWI76_RS19060 0.10 -5.5
3,958,156 - BWI76_RS19060 0.11 -4.6
3,958,173 - BWI76_RS19060 0.13 -2.3
3,958,173 - BWI76_RS19060 0.13 -0.9
3,958,173 - BWI76_RS19060 0.13 -2.8
3,958,182 - BWI76_RS19060 0.14 -1.7
3,958,182 - BWI76_RS19060 0.14 -4.5
3,958,182 - BWI76_RS19060 0.14 -3.1
3,958,182 - BWI76_RS19060 0.14 -6.0
3,958,182 - BWI76_RS19060 0.14 -2.6
3,958,182 - BWI76_RS19060 0.14 -3.8
3,958,182 - BWI76_RS19060 0.14 -2.7
3,958,215 - BWI76_RS19060 0.18 -4.4
3,958,215 - BWI76_RS19060 0.18 -4.6
3,958,215 - BWI76_RS19060 0.18 -4.3
3,958,215 - BWI76_RS19060 0.18 -6.3
3,958,228 - BWI76_RS19060 0.19 -0.9
3,958,228 - BWI76_RS19060 0.19 -2.8
3,958,247 - BWI76_RS19060 0.21 -3.5
3,958,252 - BWI76_RS19060 0.22 -5.3
3,958,252 - BWI76_RS19060 0.22 -4.4
3,958,252 - BWI76_RS19060 0.22 -4.9
3,958,252 - BWI76_RS19060 0.22 -5.5
3,958,268 - BWI76_RS19060 0.24 -3.6
3,958,268 - BWI76_RS19060 0.24 -5.4
3,958,268 - BWI76_RS19060 0.24 -4.1
3,958,268 - BWI76_RS19060 0.24 -5.2
3,958,278 - BWI76_RS19060 0.25 -5.2
3,958,315 - BWI76_RS19060 0.29 -1.6
3,958,315 - BWI76_RS19060 0.29 -3.6
3,958,365 - BWI76_RS19060 0.35 -4.5
3,958,374 - BWI76_RS19060 0.36 -5.5
3,958,374 - BWI76_RS19060 0.36 -6.7
3,958,374 - BWI76_RS19060 0.36 -3.6
3,958,412 - BWI76_RS19060 0.40 -3.0
3,958,428 - BWI76_RS19060 0.42 -2.5
3,958,506 - BWI76_RS19060 0.51 -3.3
3,958,515 - BWI76_RS19060 0.52 -4.2

Or see this region's nucleotide sequence