Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19045 and BWI76_RS19050 are separated by 317 nucleotides BWI76_RS19050 and BWI76_RS19055 overlap by 4 nucleotides BWI76_RS19055 and BWI76_RS19060 are separated by 2 nucleotides
BWI76_RS19045: BWI76_RS19045 - capsular polysaccharide biosynthesis protein, at 3,955,385 to 3,956,353
_RS19045
BWI76_RS19050: BWI76_RS19050 - NAD(P)-dependent oxidoreductase, at 3,956,671 to 3,957,525
_RS19050
BWI76_RS19055: BWI76_RS19055 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,957,522 to 3,958,058
_RS19055
BWI76_RS19060: BWI76_RS19060 - glucose-1-phosphate thymidylyltransferase, at 3,958,061 to 3,958,930
_RS19060
Position (kb)
3956
3957
3958 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 3955.673 kb on - strand, within BWI76_RS19045 at 3955.800 kb on - strand, within BWI76_RS19045 at 3955.800 kb on - strand, within BWI76_RS19045 at 3955.810 kb on - strand, within BWI76_RS19045 at 3955.810 kb on - strand, within BWI76_RS19045 at 3955.810 kb on - strand, within BWI76_RS19045 at 3955.948 kb on - strand, within BWI76_RS19045 at 3955.967 kb on - strand, within BWI76_RS19045 at 3956.156 kb on - strand, within BWI76_RS19045 at 3956.169 kb on - strand, within BWI76_RS19045 at 3956.169 kb on - strand, within BWI76_RS19045 at 3956.286 kb on - strand at 3956.552 kb on - strand at 3956.578 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.677 kb on - strand at 3956.712 kb on - strand at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.757 kb on - strand, within BWI76_RS19050 at 3956.788 kb on - strand, within BWI76_RS19050 at 3956.794 kb on - strand, within BWI76_RS19050 at 3956.794 kb on - strand, within BWI76_RS19050 at 3956.815 kb on - strand, within BWI76_RS19050 at 3956.815 kb on - strand, within BWI76_RS19050 at 3956.970 kb on - strand, within BWI76_RS19050 at 3956.979 kb on - strand, within BWI76_RS19050 at 3956.979 kb on - strand, within BWI76_RS19050 at 3956.985 kb on - strand, within BWI76_RS19050 at 3956.989 kb on - strand, within BWI76_RS19050 at 3957.040 kb on - strand, within BWI76_RS19050 at 3957.040 kb on - strand, within BWI76_RS19050 at 3957.047 kb on - strand, within BWI76_RS19050 at 3957.206 kb on - strand at 3957.251 kb on - strand, within BWI76_RS19050 at 3957.331 kb on - strand, within BWI76_RS19050 at 3957.434 kb on - strand, within BWI76_RS19050 at 3957.489 kb on - strand at 3957.489 kb on - strand at 3957.517 kb on - strand at 3957.544 kb on - strand at 3957.561 kb on - strand at 3957.656 kb on - strand, within BWI76_RS19055 at 3957.695 kb on - strand, within BWI76_RS19055 at 3957.722 kb on - strand, within BWI76_RS19055 at 3957.722 kb on - strand, within BWI76_RS19055 at 3957.732 kb on - strand, within BWI76_RS19055 at 3957.764 kb on - strand, within BWI76_RS19055 at 3957.829 kb on - strand, within BWI76_RS19055 at 3957.843 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.852 kb on - strand, within BWI76_RS19055 at 3957.888 kb on - strand, within BWI76_RS19055 at 3957.909 kb on - strand, within BWI76_RS19055 at 3957.909 kb on - strand, within BWI76_RS19055 at 3957.990 kb on - strand, within BWI76_RS19055 at 3958.008 kb on - strand at 3958.087 kb on - strand at 3958.124 kb on - strand at 3958.135 kb on - strand at 3958.148 kb on - strand, within BWI76_RS19060 at 3958.156 kb on - strand, within BWI76_RS19060 at 3958.173 kb on - strand, within BWI76_RS19060 at 3958.173 kb on - strand, within BWI76_RS19060 at 3958.173 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.182 kb on - strand, within BWI76_RS19060 at 3958.215 kb on - strand, within BWI76_RS19060 at 3958.215 kb on - strand, within BWI76_RS19060 at 3958.215 kb on - strand, within BWI76_RS19060 at 3958.215 kb on - strand, within BWI76_RS19060 at 3958.228 kb on - strand, within BWI76_RS19060 at 3958.228 kb on - strand, within BWI76_RS19060 at 3958.247 kb on - strand, within BWI76_RS19060 at 3958.252 kb on - strand, within BWI76_RS19060 at 3958.252 kb on - strand, within BWI76_RS19060 at 3958.252 kb on - strand, within BWI76_RS19060 at 3958.252 kb on - strand, within BWI76_RS19060 at 3958.268 kb on - strand, within BWI76_RS19060 at 3958.268 kb on - strand, within BWI76_RS19060 at 3958.268 kb on - strand, within BWI76_RS19060 at 3958.268 kb on - strand, within BWI76_RS19060 at 3958.278 kb on - strand, within BWI76_RS19060 at 3958.315 kb on - strand, within BWI76_RS19060 at 3958.315 kb on - strand, within BWI76_RS19060 at 3958.365 kb on - strand, within BWI76_RS19060 at 3958.374 kb on - strand, within BWI76_RS19060 at 3958.374 kb on - strand, within BWI76_RS19060 at 3958.374 kb on - strand, within BWI76_RS19060 at 3958.412 kb on - strand, within BWI76_RS19060 at 3958.428 kb on - strand, within BWI76_RS19060 at 3958.506 kb on - strand, within BWI76_RS19060 at 3958.515 kb on - strand, within BWI76_RS19060
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,955,673 - BWI76_RS19045 0.30 -3.8 3,955,800 - BWI76_RS19045 0.43 -2.2 3,955,800 - BWI76_RS19045 0.43 -4.2 3,955,810 - BWI76_RS19045 0.44 -2.8 3,955,810 - BWI76_RS19045 0.44 -4.9 3,955,810 - BWI76_RS19045 0.44 -4.1 3,955,948 - BWI76_RS19045 0.58 -2.1 3,955,967 - BWI76_RS19045 0.60 -3.5 3,956,156 - BWI76_RS19045 0.80 -3.7 3,956,169 - BWI76_RS19045 0.81 -2.9 3,956,169 - BWI76_RS19045 0.81 -0.9 3,956,286 - -5.4 3,956,552 - -0.2 3,956,578 - +2.1 3,956,677 - -0.4 3,956,677 - +0.2 3,956,677 - -1.6 3,956,677 - +0.8 3,956,677 - -0.2 3,956,677 - +0.6 3,956,677 - +0.2 3,956,677 - -0.8 3,956,712 - -5.7 3,956,757 - BWI76_RS19050 0.10 -1.2 3,956,757 - BWI76_RS19050 0.10 -3.7 3,956,757 - BWI76_RS19050 0.10 -4.8 3,956,757 - BWI76_RS19050 0.10 -5.3 3,956,757 - BWI76_RS19050 0.10 -3.7 3,956,757 - BWI76_RS19050 0.10 -2.7 3,956,757 - BWI76_RS19050 0.10 -3.9 3,956,757 - BWI76_RS19050 0.10 -4.2 3,956,757 - BWI76_RS19050 0.10 -4.9 3,956,757 - BWI76_RS19050 0.10 -2.0 3,956,788 - BWI76_RS19050 0.14 -5.1 3,956,794 - BWI76_RS19050 0.14 -2.9 3,956,794 - BWI76_RS19050 0.14 -3.9 3,956,815 - BWI76_RS19050 0.17 -2.8 3,956,815 - BWI76_RS19050 0.17 -0.6 3,956,970 - BWI76_RS19050 0.35 -4.0 3,956,979 - BWI76_RS19050 0.36 -1.5 3,956,979 - BWI76_RS19050 0.36 -4.6 3,956,985 - BWI76_RS19050 0.37 -5.3 3,956,989 - BWI76_RS19050 0.37 -4.6 3,957,040 - BWI76_RS19050 0.43 -1.4 3,957,040 - BWI76_RS19050 0.43 -3.4 3,957,047 - BWI76_RS19050 0.44 -3.8 3,957,206 - +0.1 3,957,251 - BWI76_RS19050 0.68 -3.7 3,957,331 - BWI76_RS19050 0.77 -0.3 3,957,434 - BWI76_RS19050 0.89 -3.8 3,957,489 - -0.4 3,957,489 - -3.3 3,957,517 - -0.7 3,957,544 - -0.5 3,957,561 - -2.3 3,957,656 - BWI76_RS19055 0.25 -4.5 3,957,695 - BWI76_RS19055 0.32 -4.2 3,957,722 - BWI76_RS19055 0.37 -5.1 3,957,722 - BWI76_RS19055 0.37 -3.9 3,957,732 - BWI76_RS19055 0.39 -4.1 3,957,764 - BWI76_RS19055 0.45 -5.8 3,957,829 - BWI76_RS19055 0.57 -1.7 3,957,843 - BWI76_RS19055 0.60 -3.9 3,957,852 - BWI76_RS19055 0.61 -4.2 3,957,852 - BWI76_RS19055 0.61 -4.9 3,957,852 - BWI76_RS19055 0.61 -3.4 3,957,852 - BWI76_RS19055 0.61 -5.4 3,957,852 - BWI76_RS19055 0.61 -3.1 3,957,852 - BWI76_RS19055 0.61 -3.6 3,957,852 - BWI76_RS19055 0.61 -3.3 3,957,852 - BWI76_RS19055 0.61 -2.4 3,957,852 - BWI76_RS19055 0.61 -2.6 3,957,852 - BWI76_RS19055 0.61 -4.3 3,957,888 - BWI76_RS19055 0.68 -3.8 3,957,909 - BWI76_RS19055 0.72 -3.1 3,957,909 - BWI76_RS19055 0.72 -3.1 3,957,990 - BWI76_RS19055 0.87 -5.0 3,958,008 - -1.6 3,958,087 - -2.4 3,958,124 - -6.4 3,958,135 - -5.7 3,958,148 - BWI76_RS19060 0.10 -5.5 3,958,156 - BWI76_RS19060 0.11 -4.6 3,958,173 - BWI76_RS19060 0.13 -2.3 3,958,173 - BWI76_RS19060 0.13 -0.9 3,958,173 - BWI76_RS19060 0.13 -2.8 3,958,182 - BWI76_RS19060 0.14 -1.7 3,958,182 - BWI76_RS19060 0.14 -4.5 3,958,182 - BWI76_RS19060 0.14 -3.1 3,958,182 - BWI76_RS19060 0.14 -6.0 3,958,182 - BWI76_RS19060 0.14 -2.6 3,958,182 - BWI76_RS19060 0.14 -3.8 3,958,182 - BWI76_RS19060 0.14 -2.7 3,958,215 - BWI76_RS19060 0.18 -4.4 3,958,215 - BWI76_RS19060 0.18 -4.6 3,958,215 - BWI76_RS19060 0.18 -4.3 3,958,215 - BWI76_RS19060 0.18 -6.3 3,958,228 - BWI76_RS19060 0.19 -0.9 3,958,228 - BWI76_RS19060 0.19 -2.8 3,958,247 - BWI76_RS19060 0.21 -3.5 3,958,252 - BWI76_RS19060 0.22 -5.3 3,958,252 - BWI76_RS19060 0.22 -4.4 3,958,252 - BWI76_RS19060 0.22 -4.9 3,958,252 - BWI76_RS19060 0.22 -5.5 3,958,268 - BWI76_RS19060 0.24 -3.6 3,958,268 - BWI76_RS19060 0.24 -5.4 3,958,268 - BWI76_RS19060 0.24 -4.1 3,958,268 - BWI76_RS19060 0.24 -5.2 3,958,278 - BWI76_RS19060 0.25 -5.2 3,958,315 - BWI76_RS19060 0.29 -1.6 3,958,315 - BWI76_RS19060 0.29 -3.6 3,958,365 - BWI76_RS19060 0.35 -4.5 3,958,374 - BWI76_RS19060 0.36 -5.5 3,958,374 - BWI76_RS19060 0.36 -6.7 3,958,374 - BWI76_RS19060 0.36 -3.6 3,958,412 - BWI76_RS19060 0.40 -3.0 3,958,428 - BWI76_RS19060 0.42 -2.5 3,958,506 - BWI76_RS19060 0.51 -3.3 3,958,515 - BWI76_RS19060 0.52 -4.2
Or see this region's nucleotide sequence