Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16345 and BWI76_RS16350 are separated by 79 nucleotides BWI76_RS16350 and BWI76_RS16355 are separated by 77 nucleotides BWI76_RS16355 and BWI76_RS16360 overlap by 1 nucleotides BWI76_RS16360 and BWI76_RS16365 overlap by 8 nucleotides
BWI76_RS16345: BWI76_RS16345 - nucleoid-associated protein, at 3,392,789 to 3,393,004
_RS16345
BWI76_RS16350: BWI76_RS16350 - membrane protein, at 3,393,084 to 3,393,524
_RS16350
BWI76_RS16355: BWI76_RS16355 - electron transport complex subunit A, at 3,393,602 to 3,394,183
_RS16355
BWI76_RS16360: BWI76_RS16360 - electron transport complex subunit RsxB, at 3,394,183 to 3,394,761
_RS16360
BWI76_RS16365: BWI76_RS16365 - electron transport complex subunit RsxC, at 3,394,754 to 3,396,814
_RS16365
Position (kb)
3393
3394
3395 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3392.617 kb on - strand at 3392.718 kb on + strand at 3392.723 kb on + strand at 3392.728 kb on + strand at 3392.728 kb on + strand at 3392.731 kb on - strand at 3392.736 kb on + strand at 3392.736 kb on - strand at 3392.743 kb on + strand at 3392.863 kb on + strand, within BWI76_RS16345 at 3392.871 kb on - strand, within BWI76_RS16345 at 3392.871 kb on - strand, within BWI76_RS16345 at 3392.873 kb on + strand, within BWI76_RS16345 at 3392.883 kb on + strand, within BWI76_RS16345 at 3392.913 kb on + strand, within BWI76_RS16345 at 3392.931 kb on - strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.974 kb on + strand, within BWI76_RS16345 at 3392.980 kb on - strand, within BWI76_RS16345 at 3392.982 kb on - strand, within BWI76_RS16345 at 3392.982 kb on - strand, within BWI76_RS16345 at 3393.006 kb on - strand at 3393.029 kb on + strand at 3393.029 kb on + strand at 3393.037 kb on - strand at 3393.145 kb on + strand, within BWI76_RS16350 at 3393.155 kb on + strand, within BWI76_RS16350 at 3393.158 kb on - strand, within BWI76_RS16350 at 3393.209 kb on + strand, within BWI76_RS16350 at 3393.219 kb on - strand, within BWI76_RS16350 at 3393.243 kb on + strand, within BWI76_RS16350 at 3393.254 kb on + strand, within BWI76_RS16350 at 3393.293 kb on - strand, within BWI76_RS16350 at 3393.295 kb on - strand, within BWI76_RS16350 at 3393.298 kb on - strand, within BWI76_RS16350 at 3393.383 kb on - strand, within BWI76_RS16350 at 3393.533 kb on + strand at 3393.551 kb on - strand at 3393.672 kb on - strand, within BWI76_RS16355 at 3393.681 kb on + strand, within BWI76_RS16355 at 3393.713 kb on + strand, within BWI76_RS16355 at 3393.970 kb on + strand, within BWI76_RS16355 at 3394.192 kb on + strand at 3394.369 kb on - strand, within BWI76_RS16360 at 3394.890 kb on + strand at 3395.046 kb on - strand, within BWI76_RS16365
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,392,617 - -3.8 3,392,718 + -0.6 3,392,723 + -2.0 3,392,728 + -2.5 3,392,728 + +0.4 3,392,731 - +0.5 3,392,736 + -1.0 3,392,736 - +0.4 3,392,743 + +0.6 3,392,863 + BWI76_RS16345 0.34 +0.2 3,392,871 - BWI76_RS16345 0.38 -1.5 3,392,871 - BWI76_RS16345 0.38 -0.6 3,392,873 + BWI76_RS16345 0.39 +1.3 3,392,883 + BWI76_RS16345 0.44 -0.8 3,392,913 + BWI76_RS16345 0.57 +0.1 3,392,931 - BWI76_RS16345 0.66 +0.0 3,392,974 + BWI76_RS16345 0.86 -1.7 3,392,974 + BWI76_RS16345 0.86 +0.5 3,392,974 + BWI76_RS16345 0.86 -1.0 3,392,974 + BWI76_RS16345 0.86 -0.5 3,392,974 + BWI76_RS16345 0.86 -3.1 3,392,974 + BWI76_RS16345 0.86 -0.6 3,392,974 + BWI76_RS16345 0.86 +0.5 3,392,974 + BWI76_RS16345 0.86 -1.9 3,392,974 + BWI76_RS16345 0.86 +0.2 3,392,974 + BWI76_RS16345 0.86 +0.5 3,392,974 + BWI76_RS16345 0.86 -0.7 3,392,980 - BWI76_RS16345 0.88 +0.5 3,392,982 - BWI76_RS16345 0.89 -1.4 3,392,982 - BWI76_RS16345 0.89 +0.7 3,393,006 - -0.5 3,393,029 + +0.1 3,393,029 + -1.7 3,393,037 - +0.2 3,393,145 + BWI76_RS16350 0.14 +0.0 3,393,155 + BWI76_RS16350 0.16 -0.4 3,393,158 - BWI76_RS16350 0.17 +1.1 3,393,209 + BWI76_RS16350 0.28 -1.2 3,393,219 - BWI76_RS16350 0.31 -2.5 3,393,243 + BWI76_RS16350 0.36 +0.1 3,393,254 + BWI76_RS16350 0.39 -0.6 3,393,293 - BWI76_RS16350 0.47 -0.1 3,393,295 - BWI76_RS16350 0.48 -2.4 3,393,298 - BWI76_RS16350 0.49 +1.7 3,393,383 - BWI76_RS16350 0.68 -1.1 3,393,533 + +0.1 3,393,551 - -1.5 3,393,672 - BWI76_RS16355 0.12 -2.0 3,393,681 + BWI76_RS16355 0.14 -0.8 3,393,713 + BWI76_RS16355 0.19 -1.3 3,393,970 + BWI76_RS16355 0.63 -1.2 3,394,192 + +0.3 3,394,369 - BWI76_RS16360 0.32 -0.8 3,394,890 + +0.1 3,395,046 - BWI76_RS16365 0.14 -0.1
Or see this region's nucleotide sequence