Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15115

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15110 and BWI76_RS15115 are separated by 4 nucleotidesBWI76_RS15115 and BWI76_RS15120 are separated by 677 nucleotidesBWI76_RS15120 and BWI76_RS15125 overlap by 7 nucleotides BWI76_RS15110: BWI76_RS15110 - putative excinuclease ABC subunit A, at 3,166,229 to 3,168,490 _RS15110 BWI76_RS15115: BWI76_RS15115 - MFS transporter, at 3,168,495 to 3,169,727 _RS15115 BWI76_RS15120: BWI76_RS15120 - hypothetical protein, at 3,170,405 to 3,170,623 _RS15120 BWI76_RS15125: BWI76_RS15125 - acetyltransferase, at 3,170,617 to 3,171,195 _RS15125 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3167.496 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strandat 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strand, within BWI76_RS15110at 3167.497 kb on - strandat 3167.526 kb on - strandat 3167.532 kb on - strand, within BWI76_RS15110at 3167.537 kb on + strand, within BWI76_RS15110at 3167.588 kb on - strand, within BWI76_RS15110at 3167.620 kb on - strand, within BWI76_RS15110at 3167.620 kb on - strand, within BWI76_RS15110at 3167.640 kb on - strand, within BWI76_RS15110at 3167.694 kb on - strand, within BWI76_RS15110at 3167.720 kb on - strand, within BWI76_RS15110at 3167.816 kb on - strand, within BWI76_RS15110at 3167.823 kb on + strand, within BWI76_RS15110at 3167.823 kb on + strand, within BWI76_RS15110at 3167.831 kb on - strandat 3167.831 kb on - strand, within BWI76_RS15110at 3168.059 kb on - strand, within BWI76_RS15110at 3168.064 kb on - strand, within BWI76_RS15110at 3168.075 kb on + strandat 3168.088 kb on - strand, within BWI76_RS15110at 3168.340 kb on - strandat 3168.610 kb on - strandat 3168.964 kb on - strand, within BWI76_RS15115at 3169.276 kb on - strand, within BWI76_RS15115at 3169.285 kb on + strand, within BWI76_RS15115at 3169.285 kb on + strand, within BWI76_RS15115at 3169.285 kb on + strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.293 kb on - strand, within BWI76_RS15115at 3169.380 kb on - strandat 3169.394 kb on - strand, within BWI76_RS15115at 3169.494 kb on - strand, within BWI76_RS15115at 3169.536 kb on - strand, within BWI76_RS15115at 3169.541 kb on - strand, within BWI76_RS15115at 3169.629 kb on - strandat 3169.629 kb on - strandat 3169.629 kb on - strandat 3169.629 kb on - strandat 3169.629 kb on - strandat 3169.629 kb on - strandat 3169.629 kb on - strandat 3169.640 kb on - strandat 3169.640 kb on - strandat 3169.640 kb on - strandat 3169.678 kb on + strandat 3169.684 kb on - strandat 3169.686 kb on - strandat 3169.686 kb on - strandat 3169.741 kb on - strandat 3169.741 kb on - strandat 3169.977 kb on - strandat 3170.019 kb on + strandat 3170.019 kb on + strandat 3170.019 kb on + strandat 3170.019 kb on + strandat 3170.019 kb on + strandat 3170.019 kb on + strandat 3170.019 kb on + strandat 3170.019 kb on - strandat 3170.026 kb on + strandat 3170.026 kb on + strandat 3170.031 kb on + strandat 3170.031 kb on + strandat 3170.034 kb on - strandat 3170.034 kb on - strandat 3170.039 kb on - strandat 3170.051 kb on - strandat 3170.213 kb on + strandat 3170.300 kb on + strandat 3170.346 kb on + strandat 3170.402 kb on + strandat 3170.402 kb on + strandat 3170.402 kb on + strandat 3170.410 kb on - strandat 3170.410 kb on - strandat 3170.410 kb on - strandat 3170.410 kb on - strandat 3170.410 kb on - strandat 3170.418 kb on - strandat 3170.422 kb on + strandat 3170.422 kb on + strandat 3170.423 kb on - strandat 3170.430 kb on - strand, within BWI76_RS15120at 3170.439 kb on - strand, within BWI76_RS15120at 3170.445 kb on - strandat 3170.496 kb on - strand, within BWI76_RS15120at 3170.511 kb on + strand, within BWI76_RS15120at 3170.519 kb on - strandat 3170.548 kb on - strand, within BWI76_RS15120at 3170.625 kb on + strandat 3170.633 kb on - strandat 3170.655 kb on - strandat 3170.707 kb on - strand, within BWI76_RS15125

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,167,496 - BWI76_RS15110 0.56 -2.1
3,167,497 - BWI76_RS15110 0.56 -0.8
3,167,497 - BWI76_RS15110 0.56 -2.6
3,167,497 - BWI76_RS15110 0.56 -2.9
3,167,497 - BWI76_RS15110 0.56 -1.9
3,167,497 - BWI76_RS15110 0.56 +0.1
3,167,497 - BWI76_RS15110 0.56 -1.9
3,167,497 - BWI76_RS15110 0.56 -2.9
3,167,497 - BWI76_RS15110 0.56 -2.7
3,167,497 - BWI76_RS15110 0.56 -2.1
3,167,497 - -0.9
3,167,497 - BWI76_RS15110 0.56 -1.1
3,167,497 - BWI76_RS15110 0.56 -0.9
3,167,497 - BWI76_RS15110 0.56 -1.3
3,167,497 - +0.2
3,167,526 - -0.8
3,167,532 - BWI76_RS15110 0.58 -2.2
3,167,537 + BWI76_RS15110 0.58 -1.5
3,167,588 - BWI76_RS15110 0.60 -1.8
3,167,620 - BWI76_RS15110 0.61 -1.4
3,167,620 - BWI76_RS15110 0.61 -1.1
3,167,640 - BWI76_RS15110 0.62 -2.9
3,167,694 - BWI76_RS15110 0.65 -1.7
3,167,720 - BWI76_RS15110 0.66 -2.5
3,167,816 - BWI76_RS15110 0.70 -1.9
3,167,823 + BWI76_RS15110 0.70 -3.3
3,167,823 + BWI76_RS15110 0.70 -0.4
3,167,831 - -1.4
3,167,831 - BWI76_RS15110 0.71 -3.0
3,168,059 - BWI76_RS15110 0.81 -1.4
3,168,064 - BWI76_RS15110 0.81 -4.1
3,168,075 + +0.6
3,168,088 - BWI76_RS15110 0.82 -3.6
3,168,340 - -1.0
3,168,610 - -0.6
3,168,964 - BWI76_RS15115 0.38 -0.7
3,169,276 - BWI76_RS15115 0.63 +1.6
3,169,285 + BWI76_RS15115 0.64 +1.2
3,169,285 + BWI76_RS15115 0.64 +1.0
3,169,285 + BWI76_RS15115 0.64 +0.2
3,169,293 - BWI76_RS15115 0.65 +0.7
3,169,293 - BWI76_RS15115 0.65 +0.6
3,169,293 - BWI76_RS15115 0.65 -1.6
3,169,293 - BWI76_RS15115 0.65 -0.4
3,169,293 - BWI76_RS15115 0.65 -0.8
3,169,293 - BWI76_RS15115 0.65 +0.1
3,169,293 - BWI76_RS15115 0.65 -0.8
3,169,293 - BWI76_RS15115 0.65 -1.4
3,169,293 - BWI76_RS15115 0.65 -1.6
3,169,293 - BWI76_RS15115 0.65 -0.3
3,169,293 - BWI76_RS15115 0.65 -0.1
3,169,380 - +2.0
3,169,394 - BWI76_RS15115 0.73 -2.7
3,169,494 - BWI76_RS15115 0.81 -1.9
3,169,536 - BWI76_RS15115 0.84 -2.6
3,169,541 - BWI76_RS15115 0.85 -1.8
3,169,629 - -1.3
3,169,629 - -0.4
3,169,629 - +0.1
3,169,629 - -1.8
3,169,629 - -0.7
3,169,629 - +0.7
3,169,629 - -2.8
3,169,640 - -1.3
3,169,640 - -1.5
3,169,640 - +0.6
3,169,678 + +2.6
3,169,684 - -0.4
3,169,686 - -3.8
3,169,686 - -1.8
3,169,741 - +2.6
3,169,741 - -1.3
3,169,977 - +0.0
3,170,019 + +0.5
3,170,019 + -2.1
3,170,019 + -0.5
3,170,019 + -0.7
3,170,019 + -1.9
3,170,019 + -2.0
3,170,019 + +1.0
3,170,019 - +2.9
3,170,026 + -0.3
3,170,026 + -0.4
3,170,031 + +1.4
3,170,031 + -0.8
3,170,034 - -0.6
3,170,034 - +0.7
3,170,039 - +1.8
3,170,051 - +3.3
3,170,213 + -1.3
3,170,300 + -0.1
3,170,346 + +0.2
3,170,402 + +0.9
3,170,402 + -1.0
3,170,402 + -2.4
3,170,410 - +0.4
3,170,410 - -1.5
3,170,410 - +0.3
3,170,410 - +1.5
3,170,410 - +0.0
3,170,418 - -0.1
3,170,422 + -0.7
3,170,422 + -0.7
3,170,423 - +0.4
3,170,430 - BWI76_RS15120 0.11 -0.6
3,170,439 - BWI76_RS15120 0.16 +1.3
3,170,445 - +0.1
3,170,496 - BWI76_RS15120 0.42 +0.1
3,170,511 + BWI76_RS15120 0.48 +0.1
3,170,519 - -0.3
3,170,548 - BWI76_RS15120 0.65 +0.4
3,170,625 + -1.3
3,170,633 - -0.5
3,170,655 - -1.7
3,170,707 - BWI76_RS15125 0.16 +0.3

Or see this region's nucleotide sequence