Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15110 and BWI76_RS15115 are separated by 4 nucleotides BWI76_RS15115 and BWI76_RS15120 are separated by 677 nucleotides BWI76_RS15120 and BWI76_RS15125 overlap by 7 nucleotides
BWI76_RS15110: BWI76_RS15110 - putative excinuclease ABC subunit A, at 3,166,229 to 3,168,490
_RS15110
BWI76_RS15115: BWI76_RS15115 - MFS transporter, at 3,168,495 to 3,169,727
_RS15115
BWI76_RS15120: BWI76_RS15120 - hypothetical protein, at 3,170,405 to 3,170,623
_RS15120
BWI76_RS15125: BWI76_RS15125 - acetyltransferase, at 3,170,617 to 3,171,195
_RS15125
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3167.496 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand, within BWI76_RS15110 at 3167.497 kb on - strand at 3167.526 kb on - strand at 3167.532 kb on - strand, within BWI76_RS15110 at 3167.537 kb on + strand, within BWI76_RS15110 at 3167.588 kb on - strand, within BWI76_RS15110 at 3167.620 kb on - strand, within BWI76_RS15110 at 3167.620 kb on - strand, within BWI76_RS15110 at 3167.640 kb on - strand, within BWI76_RS15110 at 3167.694 kb on - strand, within BWI76_RS15110 at 3167.720 kb on - strand, within BWI76_RS15110 at 3167.816 kb on - strand, within BWI76_RS15110 at 3167.823 kb on + strand, within BWI76_RS15110 at 3167.823 kb on + strand, within BWI76_RS15110 at 3167.831 kb on - strand at 3167.831 kb on - strand, within BWI76_RS15110 at 3168.059 kb on - strand, within BWI76_RS15110 at 3168.064 kb on - strand, within BWI76_RS15110 at 3168.075 kb on + strand at 3168.088 kb on - strand, within BWI76_RS15110 at 3168.340 kb on - strand at 3168.610 kb on - strand at 3168.964 kb on - strand, within BWI76_RS15115 at 3169.276 kb on - strand, within BWI76_RS15115 at 3169.285 kb on + strand, within BWI76_RS15115 at 3169.285 kb on + strand, within BWI76_RS15115 at 3169.285 kb on + strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.293 kb on - strand, within BWI76_RS15115 at 3169.380 kb on - strand at 3169.394 kb on - strand, within BWI76_RS15115 at 3169.494 kb on - strand, within BWI76_RS15115 at 3169.536 kb on - strand, within BWI76_RS15115 at 3169.541 kb on - strand, within BWI76_RS15115 at 3169.629 kb on - strand at 3169.629 kb on - strand at 3169.629 kb on - strand at 3169.629 kb on - strand at 3169.629 kb on - strand at 3169.629 kb on - strand at 3169.629 kb on - strand at 3169.640 kb on - strand at 3169.640 kb on - strand at 3169.640 kb on - strand at 3169.678 kb on + strand at 3169.684 kb on - strand at 3169.686 kb on - strand at 3169.686 kb on - strand at 3169.741 kb on - strand at 3169.741 kb on - strand at 3169.977 kb on - strand at 3170.019 kb on + strand at 3170.019 kb on + strand at 3170.019 kb on + strand at 3170.019 kb on + strand at 3170.019 kb on + strand at 3170.019 kb on + strand at 3170.019 kb on + strand at 3170.019 kb on - strand at 3170.026 kb on + strand at 3170.026 kb on + strand at 3170.031 kb on + strand at 3170.031 kb on + strand at 3170.034 kb on - strand at 3170.034 kb on - strand at 3170.039 kb on - strand at 3170.051 kb on - strand at 3170.213 kb on + strand at 3170.300 kb on + strand at 3170.346 kb on + strand at 3170.402 kb on + strand at 3170.402 kb on + strand at 3170.402 kb on + strand at 3170.410 kb on - strand at 3170.410 kb on - strand at 3170.410 kb on - strand at 3170.410 kb on - strand at 3170.410 kb on - strand at 3170.418 kb on - strand at 3170.422 kb on + strand at 3170.422 kb on + strand at 3170.423 kb on - strand at 3170.430 kb on - strand, within BWI76_RS15120 at 3170.439 kb on - strand, within BWI76_RS15120 at 3170.445 kb on - strand at 3170.496 kb on - strand, within BWI76_RS15120 at 3170.511 kb on + strand, within BWI76_RS15120 at 3170.519 kb on - strand at 3170.548 kb on - strand, within BWI76_RS15120 at 3170.625 kb on + strand at 3170.633 kb on - strand at 3170.655 kb on - strand at 3170.707 kb on - strand, within BWI76_RS15125
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 3,167,496 - BWI76_RS15110 0.56 -2.1 3,167,497 - BWI76_RS15110 0.56 -0.8 3,167,497 - BWI76_RS15110 0.56 -2.6 3,167,497 - BWI76_RS15110 0.56 -2.9 3,167,497 - BWI76_RS15110 0.56 -1.9 3,167,497 - BWI76_RS15110 0.56 +0.1 3,167,497 - BWI76_RS15110 0.56 -1.9 3,167,497 - BWI76_RS15110 0.56 -2.9 3,167,497 - BWI76_RS15110 0.56 -2.7 3,167,497 - BWI76_RS15110 0.56 -2.1 3,167,497 - -0.9 3,167,497 - BWI76_RS15110 0.56 -1.1 3,167,497 - BWI76_RS15110 0.56 -0.9 3,167,497 - BWI76_RS15110 0.56 -1.3 3,167,497 - +0.2 3,167,526 - -0.8 3,167,532 - BWI76_RS15110 0.58 -2.2 3,167,537 + BWI76_RS15110 0.58 -1.5 3,167,588 - BWI76_RS15110 0.60 -1.8 3,167,620 - BWI76_RS15110 0.61 -1.4 3,167,620 - BWI76_RS15110 0.61 -1.1 3,167,640 - BWI76_RS15110 0.62 -2.9 3,167,694 - BWI76_RS15110 0.65 -1.7 3,167,720 - BWI76_RS15110 0.66 -2.5 3,167,816 - BWI76_RS15110 0.70 -1.9 3,167,823 + BWI76_RS15110 0.70 -3.3 3,167,823 + BWI76_RS15110 0.70 -0.4 3,167,831 - -1.4 3,167,831 - BWI76_RS15110 0.71 -3.0 3,168,059 - BWI76_RS15110 0.81 -1.4 3,168,064 - BWI76_RS15110 0.81 -4.1 3,168,075 + +0.6 3,168,088 - BWI76_RS15110 0.82 -3.6 3,168,340 - -1.0 3,168,610 - -0.6 3,168,964 - BWI76_RS15115 0.38 -0.7 3,169,276 - BWI76_RS15115 0.63 +1.6 3,169,285 + BWI76_RS15115 0.64 +1.2 3,169,285 + BWI76_RS15115 0.64 +1.0 3,169,285 + BWI76_RS15115 0.64 +0.2 3,169,293 - BWI76_RS15115 0.65 +0.7 3,169,293 - BWI76_RS15115 0.65 +0.6 3,169,293 - BWI76_RS15115 0.65 -1.6 3,169,293 - BWI76_RS15115 0.65 -0.4 3,169,293 - BWI76_RS15115 0.65 -0.8 3,169,293 - BWI76_RS15115 0.65 +0.1 3,169,293 - BWI76_RS15115 0.65 -0.8 3,169,293 - BWI76_RS15115 0.65 -1.4 3,169,293 - BWI76_RS15115 0.65 -1.6 3,169,293 - BWI76_RS15115 0.65 -0.3 3,169,293 - BWI76_RS15115 0.65 -0.1 3,169,380 - +2.0 3,169,394 - BWI76_RS15115 0.73 -2.7 3,169,494 - BWI76_RS15115 0.81 -1.9 3,169,536 - BWI76_RS15115 0.84 -2.6 3,169,541 - BWI76_RS15115 0.85 -1.8 3,169,629 - -1.3 3,169,629 - -0.4 3,169,629 - +0.1 3,169,629 - -1.8 3,169,629 - -0.7 3,169,629 - +0.7 3,169,629 - -2.8 3,169,640 - -1.3 3,169,640 - -1.5 3,169,640 - +0.6 3,169,678 + +2.6 3,169,684 - -0.4 3,169,686 - -3.8 3,169,686 - -1.8 3,169,741 - +2.6 3,169,741 - -1.3 3,169,977 - +0.0 3,170,019 + +0.5 3,170,019 + -2.1 3,170,019 + -0.5 3,170,019 + -0.7 3,170,019 + -1.9 3,170,019 + -2.0 3,170,019 + +1.0 3,170,019 - +2.9 3,170,026 + -0.3 3,170,026 + -0.4 3,170,031 + +1.4 3,170,031 + -0.8 3,170,034 - -0.6 3,170,034 - +0.7 3,170,039 - +1.8 3,170,051 - +3.3 3,170,213 + -1.3 3,170,300 + -0.1 3,170,346 + +0.2 3,170,402 + +0.9 3,170,402 + -1.0 3,170,402 + -2.4 3,170,410 - +0.4 3,170,410 - -1.5 3,170,410 - +0.3 3,170,410 - +1.5 3,170,410 - +0.0 3,170,418 - -0.1 3,170,422 + -0.7 3,170,422 + -0.7 3,170,423 - +0.4 3,170,430 - BWI76_RS15120 0.11 -0.6 3,170,439 - BWI76_RS15120 0.16 +1.3 3,170,445 - +0.1 3,170,496 - BWI76_RS15120 0.42 +0.1 3,170,511 + BWI76_RS15120 0.48 +0.1 3,170,519 - -0.3 3,170,548 - BWI76_RS15120 0.65 +0.4 3,170,625 + -1.3 3,170,633 - -0.5 3,170,655 - -1.7 3,170,707 - BWI76_RS15125 0.16 +0.3
Or see this region's nucleotide sequence