Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12595

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12590 and BWI76_RS12595 are separated by 99 nucleotidesBWI76_RS12595 and BWI76_RS12600 are separated by 81 nucleotides BWI76_RS12590: BWI76_RS12590 - helix-turn-helix-type transcriptional regulator, at 2,628,126 to 2,628,854 _RS12590 BWI76_RS12595: BWI76_RS12595 - hypothetical protein, at 2,628,954 to 2,629,298 _RS12595 BWI76_RS12600: BWI76_RS12600 - MFS transporter, at 2,629,380 to 2,630,501 _RS12600 Position (kb) 2628 2629 2630Strain fitness (log2 ratio) -2 -1 0 1 2at 2628.058 kb on - strandat 2628.400 kb on - strand, within BWI76_RS12590at 2628.416 kb on - strand, within BWI76_RS12590at 2628.484 kb on - strand, within BWI76_RS12590at 2628.771 kb on - strand, within BWI76_RS12590at 2628.771 kb on - strand, within BWI76_RS12590at 2629.141 kb on - strand, within BWI76_RS12595at 2629.198 kb on + strand, within BWI76_RS12595at 2629.230 kb on - strand, within BWI76_RS12595at 2629.282 kb on - strandat 2629.372 kb on + strandat 2629.380 kb on - strandat 2629.819 kb on - strand, within BWI76_RS12600at 2629.864 kb on - strand, within BWI76_RS12600at 2629.927 kb on + strand, within BWI76_RS12600at 2630.077 kb on - strand, within BWI76_RS12600at 2630.215 kb on + strand, within BWI76_RS12600

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,628,058 - +0.8
2,628,400 - BWI76_RS12590 0.38 +1.1
2,628,416 - BWI76_RS12590 0.40 -1.6
2,628,484 - BWI76_RS12590 0.49 -1.3
2,628,771 - BWI76_RS12590 0.88 +0.9
2,628,771 - BWI76_RS12590 0.88 -2.1
2,629,141 - BWI76_RS12595 0.54 -1.7
2,629,198 + BWI76_RS12595 0.71 -2.2
2,629,230 - BWI76_RS12595 0.80 -0.6
2,629,282 - -0.3
2,629,372 + -0.1
2,629,380 - +0.3
2,629,819 - BWI76_RS12600 0.39 -0.2
2,629,864 - BWI76_RS12600 0.43 +2.2
2,629,927 + BWI76_RS12600 0.49 -0.6
2,630,077 - BWI76_RS12600 0.62 -0.2
2,630,215 + BWI76_RS12600 0.74 -0.5

Or see this region's nucleotide sequence