Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09635

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09625 and BWI76_RS09630 are separated by 0 nucleotidesBWI76_RS09630 and BWI76_RS09635 are separated by 38 nucleotidesBWI76_RS09635 and BWI76_RS09640 are separated by 0 nucleotides BWI76_RS09625: BWI76_RS09625 - hypothetical protein, at 2,014,078 to 2,014,429 _RS09625 BWI76_RS09630: BWI76_RS09630 - leucyl/phenylalanyl-tRNA--protein transferase, at 2,014,430 to 2,015,134 _RS09630 BWI76_RS09635: BWI76_RS09635 - amino acid ABC transporter ATP-binding protein, at 2,015,173 to 2,016,894 _RS09635 BWI76_RS09640: BWI76_RS09640 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 2,016,895 to 2,018,661 _RS09640 Position (kb) 2015 2016 2017Strain fitness (log2 ratio) -2 -1 0 1 2at 2014.300 kb on + strand, within BWI76_RS09625at 2014.875 kb on - strand, within BWI76_RS09630at 2014.886 kb on - strand, within BWI76_RS09630at 2015.107 kb on + strandat 2015.184 kb on + strandat 2015.192 kb on - strandat 2015.306 kb on - strandat 2015.625 kb on - strand, within BWI76_RS09635at 2016.197 kb on - strand, within BWI76_RS09635at 2016.501 kb on + strand, within BWI76_RS09635at 2016.577 kb on - strand, within BWI76_RS09635at 2017.001 kb on - strandat 2017.007 kb on + strandat 2017.216 kb on - strand, within BWI76_RS09640at 2017.319 kb on + strand, within BWI76_RS09640at 2017.355 kb on - strand, within BWI76_RS09640at 2017.392 kb on - strand, within BWI76_RS09640at 2017.817 kb on - strand, within BWI76_RS09640

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,014,300 + BWI76_RS09625 0.63 -0.3
2,014,875 - BWI76_RS09630 0.63 -0.4
2,014,886 - BWI76_RS09630 0.65 -0.1
2,015,107 + -0.0
2,015,184 + -2.2
2,015,192 - -0.2
2,015,306 - -0.3
2,015,625 - BWI76_RS09635 0.26 +2.0
2,016,197 - BWI76_RS09635 0.59 -1.0
2,016,501 + BWI76_RS09635 0.77 +1.0
2,016,577 - BWI76_RS09635 0.82 +0.6
2,017,001 - -1.5
2,017,007 + -2.5
2,017,216 - BWI76_RS09640 0.18 -0.6
2,017,319 + BWI76_RS09640 0.24 -2.1
2,017,355 - BWI76_RS09640 0.26 -0.4
2,017,392 - BWI76_RS09640 0.28 -1.8
2,017,817 - BWI76_RS09640 0.52 +1.2

Or see this region's nucleotide sequence