Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09185 and BWI76_RS09190 are separated by 79 nucleotides BWI76_RS09190 and BWI76_RS09195 overlap by 23 nucleotides
BWI76_RS09185: BWI76_RS09185 - integrase, at 1,939,457 to 1,940,503
_RS09185
BWI76_RS09190: BWI76_RS09190 - hypothetical protein, at 1,940,583 to 1,940,954
_RS09190
BWI76_RS09195: BWI76_RS09195 - N-acetyltransferase, at 1,940,932 to 1,942,005
_RS09195
Position (kb) 1940
1941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1939.657 kb on + strand, within BWI76_RS09185 at 1939.695 kb on + strand, within BWI76_RS09185 at 1939.703 kb on - strand, within BWI76_RS09185 at 1939.792 kb on + strand, within BWI76_RS09185 at 1939.849 kb on + strand, within BWI76_RS09185 at 1939.850 kb on - strand, within BWI76_RS09185 at 1939.873 kb on + strand, within BWI76_RS09185 at 1940.055 kb on + strand, within BWI76_RS09185 at 1940.135 kb on - strand, within BWI76_RS09185 at 1940.168 kb on - strand, within BWI76_RS09185 at 1940.278 kb on + strand, within BWI76_RS09185 at 1940.349 kb on + strand, within BWI76_RS09185 at 1940.369 kb on - strand, within BWI76_RS09185 at 1940.384 kb on - strand, within BWI76_RS09185 at 1940.427 kb on + strand at 1940.457 kb on - strand at 1940.566 kb on + strand at 1940.571 kb on + strand at 1940.579 kb on - strand at 1940.579 kb on - strand at 1940.581 kb on + strand at 1940.581 kb on - strand at 1940.589 kb on - strand at 1940.606 kb on - strand at 1940.607 kb on - strand at 1940.616 kb on - strand at 1940.616 kb on - strand at 1940.616 kb on - strand at 1940.637 kb on - strand, within BWI76_RS09190 at 1940.638 kb on - strand, within BWI76_RS09190 at 1940.674 kb on - strand, within BWI76_RS09190 at 1940.693 kb on - strand, within BWI76_RS09190 at 1940.693 kb on - strand, within BWI76_RS09190 at 1940.694 kb on - strand, within BWI76_RS09190 at 1940.772 kb on - strand, within BWI76_RS09190 at 1940.772 kb on - strand, within BWI76_RS09190 at 1940.818 kb on - strand, within BWI76_RS09190 at 1940.831 kb on - strand, within BWI76_RS09190 at 1940.863 kb on - strand, within BWI76_RS09190 at 1941.009 kb on - strand at 1941.512 kb on - strand at 1941.567 kb on - strand, within BWI76_RS09195 at 1941.882 kb on - strand, within BWI76_RS09195
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,939,657 + BWI76_RS09185 0.19 -1.6 1,939,695 + BWI76_RS09185 0.23 -0.0 1,939,703 - BWI76_RS09185 0.23 -0.2 1,939,792 + BWI76_RS09185 0.32 -0.3 1,939,849 + BWI76_RS09185 0.37 -0.7 1,939,850 - BWI76_RS09185 0.38 -0.2 1,939,873 + BWI76_RS09185 0.40 -0.1 1,940,055 + BWI76_RS09185 0.57 +0.1 1,940,135 - BWI76_RS09185 0.65 +0.1 1,940,168 - BWI76_RS09185 0.68 +0.1 1,940,278 + BWI76_RS09185 0.78 +0.7 1,940,349 + BWI76_RS09185 0.85 +1.4 1,940,369 - BWI76_RS09185 0.87 -0.1 1,940,384 - BWI76_RS09185 0.89 +0.7 1,940,427 + +0.4 1,940,457 - -0.4 1,940,566 + +0.3 1,940,571 + +1.7 1,940,579 - -2.3 1,940,579 - +5.9 1,940,581 + -0.1 1,940,581 - +0.6 1,940,589 - +1.9 1,940,606 - -1.9 1,940,607 - -0.9 1,940,616 - -0.1 1,940,616 - -2.8 1,940,616 - -2.5 1,940,637 - BWI76_RS09190 0.15 -0.9 1,940,638 - BWI76_RS09190 0.15 -2.1 1,940,674 - BWI76_RS09190 0.24 -0.1 1,940,693 - BWI76_RS09190 0.30 -0.8 1,940,693 - BWI76_RS09190 0.30 +0.1 1,940,694 - BWI76_RS09190 0.30 -1.2 1,940,772 - BWI76_RS09190 0.51 -0.7 1,940,772 - BWI76_RS09190 0.51 +0.2 1,940,818 - BWI76_RS09190 0.63 -1.7 1,940,831 - BWI76_RS09190 0.67 -0.3 1,940,863 - BWI76_RS09190 0.75 +0.8 1,941,009 - +0.6 1,941,512 - +1.0 1,941,567 - BWI76_RS09195 0.59 +0.8 1,941,882 - BWI76_RS09195 0.88 +1.6
Or see this region's nucleotide sequence