Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08495 and BWI76_RS08500 are separated by 15 nucleotides
BWI76_RS08495: BWI76_RS08495 - cytochrome bd-I ubiquinol oxidase subunit I, at 1,800,095 to 1,801,663
_RS08495
BWI76_RS08500: BWI76_RS08500 - cytochrome d ubiquinol oxidase subunit 2, at 1,801,679 to 1,802,818
_RS08500
Position (kb)
1800
1801
1802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1799.341 kb on + strand at 1799.341 kb on + strand at 1799.341 kb on + strand at 1799.341 kb on + strand at 1799.341 kb on + strand at 1799.341 kb on + strand at 1799.356 kb on + strand at 1799.363 kb on - strand at 1799.364 kb on - strand at 1799.364 kb on - strand at 1799.378 kb on - strand at 1799.385 kb on + strand at 1799.385 kb on + strand at 1799.391 kb on - strand at 1799.395 kb on - strand at 1799.402 kb on + strand at 1799.403 kb on - strand at 1799.444 kb on + strand at 1799.452 kb on - strand at 1799.477 kb on + strand at 1799.577 kb on + strand at 1799.599 kb on + strand at 1799.607 kb on - strand at 1799.607 kb on - strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.693 kb on + strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.701 kb on - strand at 1799.708 kb on - strand at 1799.708 kb on - strand at 1799.714 kb on - strand at 1799.715 kb on + strand at 1799.850 kb on + strand at 1799.850 kb on + strand at 1799.905 kb on + strand at 1799.905 kb on + strand at 1799.905 kb on + strand at 1799.905 kb on + strand at 1799.913 kb on - strand at 1799.913 kb on - strand at 1799.913 kb on - strand at 1800.000 kb on - strand at 1800.020 kb on + strand at 1800.026 kb on + strand at 1800.026 kb on + strand at 1800.034 kb on + strand at 1800.042 kb on - strand at 1800.050 kb on - strand at 1800.050 kb on - strand at 1800.052 kb on + strand at 1800.052 kb on + strand at 1800.053 kb on + strand at 1800.059 kb on + strand at 1800.060 kb on - strand at 1800.075 kb on - strand at 1800.087 kb on + strand at 1800.089 kb on + strand at 1800.143 kb on + strand at 1800.143 kb on + strand at 1800.149 kb on - strand at 1800.151 kb on - strand at 1800.171 kb on + strand at 1800.175 kb on + strand at 1800.176 kb on + strand at 1800.177 kb on + strand at 1800.209 kb on + strand at 1800.261 kb on - strand, within BWI76_RS08495 at 1800.261 kb on - strand, within BWI76_RS08495 at 1800.297 kb on - strand, within BWI76_RS08495 at 1800.472 kb on - strand, within BWI76_RS08495 at 1800.476 kb on + strand, within BWI76_RS08495 at 1800.587 kb on + strand, within BWI76_RS08495 at 1800.622 kb on + strand, within BWI76_RS08495 at 1801.011 kb on + strand, within BWI76_RS08495 at 1801.181 kb on - strand, within BWI76_RS08495 at 1801.313 kb on + strand, within BWI76_RS08495 at 1801.380 kb on - strand, within BWI76_RS08495 at 1801.545 kb on - strand at 1801.909 kb on + strand, within BWI76_RS08500 at 1801.917 kb on - strand, within BWI76_RS08500 at 1802.639 kb on + strand, within BWI76_RS08500
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,799,341 + -0.2 1,799,341 + -1.0 1,799,341 + -0.5 1,799,341 + +0.8 1,799,341 + -1.6 1,799,341 + -1.5 1,799,356 + +2.1 1,799,363 - +1.0 1,799,364 - +0.1 1,799,364 - -0.5 1,799,378 - -0.4 1,799,385 + -0.4 1,799,385 + -1.2 1,799,391 - -0.8 1,799,395 - -0.4 1,799,402 + -1.1 1,799,403 - -0.2 1,799,444 + +2.3 1,799,452 - +2.0 1,799,477 + -0.7 1,799,577 + -2.2 1,799,599 + +0.1 1,799,607 - +1.7 1,799,607 - -2.3 1,799,693 + -0.2 1,799,693 + -1.2 1,799,693 + -0.2 1,799,693 + -2.2 1,799,693 + -1.0 1,799,693 + +0.2 1,799,693 + +1.2 1,799,693 + -1.3 1,799,693 + -1.8 1,799,701 - -0.7 1,799,701 - -0.9 1,799,701 - -0.9 1,799,701 - +0.6 1,799,701 - +0.2 1,799,701 - -1.2 1,799,701 - +0.6 1,799,701 - -0.5 1,799,701 - +1.0 1,799,701 - -2.0 1,799,701 - -0.0 1,799,708 - -1.3 1,799,708 - -0.3 1,799,714 - +1.0 1,799,715 + -0.8 1,799,850 + +0.3 1,799,850 + -0.4 1,799,905 + -0.9 1,799,905 + +0.1 1,799,905 + +0.8 1,799,905 + +0.3 1,799,913 - +1.4 1,799,913 - +1.8 1,799,913 - -1.7 1,800,000 - -2.7 1,800,020 + +0.7 1,800,026 + -0.3 1,800,026 + -0.0 1,800,034 + +0.8 1,800,042 - -0.8 1,800,050 - -0.4 1,800,050 - +1.6 1,800,052 + +0.5 1,800,052 + -3.1 1,800,053 + +0.2 1,800,059 + -0.2 1,800,060 - -1.8 1,800,075 - -0.6 1,800,087 + +1.0 1,800,089 + -1.2 1,800,143 + +0.8 1,800,143 + -0.7 1,800,149 - +1.9 1,800,151 - +1.2 1,800,171 + -1.1 1,800,175 + -0.2 1,800,176 + +0.9 1,800,177 + +0.3 1,800,209 + -1.8 1,800,261 - BWI76_RS08495 0.11 -0.1 1,800,261 - BWI76_RS08495 0.11 -1.6 1,800,297 - BWI76_RS08495 0.13 +0.0 1,800,472 - BWI76_RS08495 0.24 -2.0 1,800,476 + BWI76_RS08495 0.24 -0.1 1,800,587 + BWI76_RS08495 0.31 -2.0 1,800,622 + BWI76_RS08495 0.34 -1.8 1,801,011 + BWI76_RS08495 0.58 -1.2 1,801,181 - BWI76_RS08495 0.69 -1.7 1,801,313 + BWI76_RS08495 0.78 -1.2 1,801,380 - BWI76_RS08495 0.82 -1.5 1,801,545 - +0.3 1,801,909 + BWI76_RS08500 0.20 -0.6 1,801,917 - BWI76_RS08500 0.21 -0.5 1,802,639 + BWI76_RS08500 0.84 -0.9
Or see this region's nucleotide sequence