Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08495

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08495 and BWI76_RS08500 are separated by 15 nucleotides BWI76_RS08495: BWI76_RS08495 - cytochrome bd-I ubiquinol oxidase subunit I, at 1,800,095 to 1,801,663 _RS08495 BWI76_RS08500: BWI76_RS08500 - cytochrome d ubiquinol oxidase subunit 2, at 1,801,679 to 1,802,818 _RS08500 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.341 kb on + strandat 1799.356 kb on + strandat 1799.363 kb on - strandat 1799.364 kb on - strandat 1799.364 kb on - strandat 1799.378 kb on - strandat 1799.385 kb on + strandat 1799.385 kb on + strandat 1799.391 kb on - strandat 1799.395 kb on - strandat 1799.402 kb on + strandat 1799.403 kb on - strandat 1799.444 kb on + strandat 1799.452 kb on - strandat 1799.477 kb on + strandat 1799.577 kb on + strandat 1799.599 kb on + strandat 1799.607 kb on - strandat 1799.607 kb on - strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.693 kb on + strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.701 kb on - strandat 1799.708 kb on - strandat 1799.708 kb on - strandat 1799.714 kb on - strandat 1799.715 kb on + strandat 1799.850 kb on + strandat 1799.850 kb on + strandat 1799.905 kb on + strandat 1799.905 kb on + strandat 1799.905 kb on + strandat 1799.905 kb on + strandat 1799.913 kb on - strandat 1799.913 kb on - strandat 1799.913 kb on - strandat 1800.000 kb on - strandat 1800.020 kb on + strandat 1800.026 kb on + strandat 1800.026 kb on + strandat 1800.034 kb on + strandat 1800.042 kb on - strandat 1800.050 kb on - strandat 1800.050 kb on - strandat 1800.052 kb on + strandat 1800.052 kb on + strandat 1800.053 kb on + strandat 1800.059 kb on + strandat 1800.060 kb on - strandat 1800.075 kb on - strandat 1800.087 kb on + strandat 1800.089 kb on + strandat 1800.143 kb on + strandat 1800.143 kb on + strandat 1800.149 kb on - strandat 1800.151 kb on - strandat 1800.171 kb on + strandat 1800.175 kb on + strandat 1800.176 kb on + strandat 1800.177 kb on + strandat 1800.209 kb on + strandat 1800.261 kb on - strand, within BWI76_RS08495at 1800.261 kb on - strand, within BWI76_RS08495at 1800.297 kb on - strand, within BWI76_RS08495at 1800.472 kb on - strand, within BWI76_RS08495at 1800.476 kb on + strand, within BWI76_RS08495at 1800.587 kb on + strand, within BWI76_RS08495at 1800.622 kb on + strand, within BWI76_RS08495at 1801.011 kb on + strand, within BWI76_RS08495at 1801.181 kb on - strand, within BWI76_RS08495at 1801.313 kb on + strand, within BWI76_RS08495at 1801.380 kb on - strand, within BWI76_RS08495at 1801.545 kb on - strandat 1801.909 kb on + strand, within BWI76_RS08500at 1801.917 kb on - strand, within BWI76_RS08500at 1802.639 kb on + strand, within BWI76_RS08500

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
1,799,341 + -0.2
1,799,341 + -1.0
1,799,341 + -0.5
1,799,341 + +0.8
1,799,341 + -1.6
1,799,341 + -1.5
1,799,356 + +2.1
1,799,363 - +1.0
1,799,364 - +0.1
1,799,364 - -0.5
1,799,378 - -0.4
1,799,385 + -0.4
1,799,385 + -1.2
1,799,391 - -0.8
1,799,395 - -0.4
1,799,402 + -1.1
1,799,403 - -0.2
1,799,444 + +2.3
1,799,452 - +2.0
1,799,477 + -0.7
1,799,577 + -2.2
1,799,599 + +0.1
1,799,607 - +1.7
1,799,607 - -2.3
1,799,693 + -0.2
1,799,693 + -1.2
1,799,693 + -0.2
1,799,693 + -2.2
1,799,693 + -1.0
1,799,693 + +0.2
1,799,693 + +1.2
1,799,693 + -1.3
1,799,693 + -1.8
1,799,701 - -0.7
1,799,701 - -0.9
1,799,701 - -0.9
1,799,701 - +0.6
1,799,701 - +0.2
1,799,701 - -1.2
1,799,701 - +0.6
1,799,701 - -0.5
1,799,701 - +1.0
1,799,701 - -2.0
1,799,701 - -0.0
1,799,708 - -1.3
1,799,708 - -0.3
1,799,714 - +1.0
1,799,715 + -0.8
1,799,850 + +0.3
1,799,850 + -0.4
1,799,905 + -0.9
1,799,905 + +0.1
1,799,905 + +0.8
1,799,905 + +0.3
1,799,913 - +1.4
1,799,913 - +1.8
1,799,913 - -1.7
1,800,000 - -2.7
1,800,020 + +0.7
1,800,026 + -0.3
1,800,026 + -0.0
1,800,034 + +0.8
1,800,042 - -0.8
1,800,050 - -0.4
1,800,050 - +1.6
1,800,052 + +0.5
1,800,052 + -3.1
1,800,053 + +0.2
1,800,059 + -0.2
1,800,060 - -1.8
1,800,075 - -0.6
1,800,087 + +1.0
1,800,089 + -1.2
1,800,143 + +0.8
1,800,143 + -0.7
1,800,149 - +1.9
1,800,151 - +1.2
1,800,171 + -1.1
1,800,175 + -0.2
1,800,176 + +0.9
1,800,177 + +0.3
1,800,209 + -1.8
1,800,261 - BWI76_RS08495 0.11 -0.1
1,800,261 - BWI76_RS08495 0.11 -1.6
1,800,297 - BWI76_RS08495 0.13 +0.0
1,800,472 - BWI76_RS08495 0.24 -2.0
1,800,476 + BWI76_RS08495 0.24 -0.1
1,800,587 + BWI76_RS08495 0.31 -2.0
1,800,622 + BWI76_RS08495 0.34 -1.8
1,801,011 + BWI76_RS08495 0.58 -1.2
1,801,181 - BWI76_RS08495 0.69 -1.7
1,801,313 + BWI76_RS08495 0.78 -1.2
1,801,380 - BWI76_RS08495 0.82 -1.5
1,801,545 - +0.3
1,801,909 + BWI76_RS08500 0.20 -0.6
1,801,917 - BWI76_RS08500 0.21 -0.5
1,802,639 + BWI76_RS08500 0.84 -0.9

Or see this region's nucleotide sequence