Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03290 and BWI76_RS03295 are separated by 72 nucleotides BWI76_RS03295 and BWI76_RS03300 are separated by 32 nucleotides BWI76_RS03300 and BWI76_RS03305 overlap by 32 nucleotides
BWI76_RS03290: BWI76_RS03290 - hypothetical protein, at 679,037 to 679,962
_RS03290
BWI76_RS03295: BWI76_RS03295 - transposase, at 680,035 to 680,298
_RS03295
BWI76_RS03300: BWI76_RS03300 - hypothetical protein, at 680,331 to 681,125
_RS03300
BWI76_RS03305: BWI76_RS03305 - hypothetical protein, at 681,094 to 682,334
_RS03305
Position (kb) 680
681
682 Strain fitness (log2 ratio) -2
-1
0
1 at 679.369 kb on + strand, within BWI76_RS03290 at 679.507 kb on + strand, within BWI76_RS03290 at 679.546 kb on + strand, within BWI76_RS03290 at 679.657 kb on + strand, within BWI76_RS03290 at 679.657 kb on + strand, within BWI76_RS03290 at 679.880 kb on + strand at 679.980 kb on + strand at 679.989 kb on + strand at 679.998 kb on - strand at 680.006 kb on + strand at 680.015 kb on + strand at 680.020 kb on + strand at 680.142 kb on + strand, within BWI76_RS03295 at 680.188 kb on - strand, within BWI76_RS03295 at 680.256 kb on + strand at 680.275 kb on - strand at 680.327 kb on + strand at 680.336 kb on - strand at 680.494 kb on + strand, within BWI76_RS03300 at 680.529 kb on + strand, within BWI76_RS03300 at 680.695 kb on + strand, within BWI76_RS03300 at 680.836 kb on - strand, within BWI76_RS03300 at 680.893 kb on + strand, within BWI76_RS03300 at 680.895 kb on + strand, within BWI76_RS03300 at 680.923 kb on + strand, within BWI76_RS03300
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 679,369 + BWI76_RS03290 0.36 +0.2 679,507 + BWI76_RS03290 0.51 +0.2 679,546 + BWI76_RS03290 0.55 +0.5 679,657 + BWI76_RS03290 0.67 -0.5 679,657 + BWI76_RS03290 0.67 +0.2 679,880 + +0.1 679,980 + -0.1 679,989 + -0.2 679,998 - -0.3 680,006 + +0.1 680,015 + -1.4 680,020 + +0.1 680,142 + BWI76_RS03295 0.41 -1.3 680,188 - BWI76_RS03295 0.58 +0.8 680,256 + +0.2 680,275 - +0.4 680,327 + +1.3 680,336 - -1.1 680,494 + BWI76_RS03300 0.21 -1.4 680,529 + BWI76_RS03300 0.25 -1.1 680,695 + BWI76_RS03300 0.46 -1.2 680,836 - BWI76_RS03300 0.64 -1.4 680,893 + BWI76_RS03300 0.71 +0.3 680,895 + BWI76_RS03300 0.71 +0.8 680,923 + BWI76_RS03300 0.74 -2.2
Or see this region's nucleotide sequence