Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02785

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS02780 and BWI76_RS02785 are separated by 2 nucleotidesBWI76_RS02785 and BWI76_RS02790 are separated by 156 nucleotides BWI76_RS02780: BWI76_RS02780 - translocation and assembly module TamB, at 564,944 to 568,720 _RS02780 BWI76_RS02785: BWI76_RS02785 - AIG2 family protein, at 568,723 to 569,067 _RS02785 BWI76_RS02790: BWI76_RS02790 - inorganic pyrophosphatase, at 569,224 to 569,751 _RS02790 Position (kb) 568 569 570Strain fitness (log2 ratio) -2 -1 0 1at 567.941 kb on + strand, within BWI76_RS02780at 567.987 kb on + strand, within BWI76_RS02780at 568.111 kb on + strand, within BWI76_RS02780at 568.372 kb on + strandat 568.379 kb on - strandat 568.394 kb on + strandat 568.475 kb on - strandat 568.530 kb on + strandat 568.550 kb on + strandat 568.571 kb on - strandat 568.622 kb on + strandat 568.685 kb on - strandat 568.745 kb on + strandat 568.980 kb on - strand, within BWI76_RS02785at 569.011 kb on + strand, within BWI76_RS02785at 569.019 kb on - strand, within BWI76_RS02785at 569.798 kb on - strandat 569.849 kb on - strandat 570.020 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
remove
567,941 + BWI76_RS02780 0.79 +0.1
567,987 + BWI76_RS02780 0.81 -1.6
568,111 + BWI76_RS02780 0.84 -1.1
568,372 + -0.3
568,379 - +1.5
568,394 + -0.3
568,475 - +0.4
568,530 + +0.1
568,550 + +1.7
568,571 - +0.3
568,622 + -0.9
568,685 - -0.4
568,745 + +0.4
568,980 - BWI76_RS02785 0.74 -2.0
569,011 + BWI76_RS02785 0.83 -0.9
569,019 - BWI76_RS02785 0.86 -2.0
569,798 - +0.5
569,849 - +0.4
570,020 + -1.4

Or see this region's nucleotide sequence