Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02600 and BWI76_RS02605 are separated by 176 nucleotides BWI76_RS02605 and BWI76_RS02610 overlap by 4 nucleotides BWI76_RS02610 and BWI76_RS02615 are separated by 106 nucleotides
BWI76_RS02600: BWI76_RS02600 - biofilm peroxide resistance protein BsmA, at 532,547 to 532,876
_RS02600
BWI76_RS02605: BWI76_RS02605 - esterase, at 533,053 to 533,769
_RS02605
BWI76_RS02610: BWI76_RS02610 - transcriptional regulator, at 533,766 to 534,521
_RS02610
BWI76_RS02615: BWI76_RS02615 - L-ascorbate-6-phosphate lactonase, at 534,628 to 535,692
_RS02615
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 532.789 kb on + strand, within BWI76_RS02600 at 532.795 kb on - strand, within BWI76_RS02600 at 532.834 kb on + strand, within BWI76_RS02600 at 532.834 kb on + strand, within BWI76_RS02600 at 532.834 kb on + strand, within BWI76_RS02600 at 532.842 kb on - strand, within BWI76_RS02600 at 532.842 kb on - strand, within BWI76_RS02600 at 532.842 kb on - strand, within BWI76_RS02600 at 532.878 kb on + strand at 532.886 kb on - strand at 533.068 kb on - strand at 533.165 kb on + strand, within BWI76_RS02605 at 533.173 kb on - strand, within BWI76_RS02605 at 533.173 kb on - strand, within BWI76_RS02605 at 533.173 kb on - strand, within BWI76_RS02605 at 533.176 kb on + strand, within BWI76_RS02605 at 533.239 kb on + strand, within BWI76_RS02605 at 533.400 kb on + strand, within BWI76_RS02605 at 533.794 kb on + strand at 533.866 kb on + strand, within BWI76_RS02610 at 533.902 kb on + strand, within BWI76_RS02610 at 533.974 kb on + strand, within BWI76_RS02610 at 533.982 kb on - strand, within BWI76_RS02610 at 534.002 kb on - strand, within BWI76_RS02610 at 534.053 kb on + strand, within BWI76_RS02610 at 534.073 kb on - strand, within BWI76_RS02610 at 534.082 kb on + strand, within BWI76_RS02610 at 534.165 kb on + strand, within BWI76_RS02610 at 534.633 kb on - strand at 534.646 kb on - strand at 534.646 kb on - strand at 534.652 kb on + strand at 534.659 kb on - strand at 534.905 kb on - strand, within BWI76_RS02615 at 535.039 kb on - strand, within BWI76_RS02615 at 535.131 kb on - strand, within BWI76_RS02615 at 535.134 kb on - strand, within BWI76_RS02615 at 535.134 kb on - strand, within BWI76_RS02615 at 535.156 kb on - strand, within BWI76_RS02615 at 535.240 kb on + strand, within BWI76_RS02615 at 535.241 kb on - strand, within BWI76_RS02615 at 535.291 kb on + strand, within BWI76_RS02615 at 535.299 kb on - strand at 535.415 kb on + strand, within BWI76_RS02615
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 532,789 + BWI76_RS02600 0.73 -0.1 532,795 - BWI76_RS02600 0.75 +0.0 532,834 + BWI76_RS02600 0.87 -1.4 532,834 + BWI76_RS02600 0.87 -2.0 532,834 + BWI76_RS02600 0.87 -0.2 532,842 - BWI76_RS02600 0.89 -0.5 532,842 - BWI76_RS02600 0.89 +0.4 532,842 - BWI76_RS02600 0.89 +0.0 532,878 + +0.4 532,886 - -0.2 533,068 - -0.3 533,165 + BWI76_RS02605 0.16 -1.0 533,173 - BWI76_RS02605 0.17 -0.2 533,173 - BWI76_RS02605 0.17 +1.0 533,173 - BWI76_RS02605 0.17 +0.6 533,176 + BWI76_RS02605 0.17 +0.1 533,239 + BWI76_RS02605 0.26 +0.3 533,400 + BWI76_RS02605 0.48 +0.2 533,794 + -2.2 533,866 + BWI76_RS02610 0.13 -2.2 533,902 + BWI76_RS02610 0.18 -0.8 533,974 + BWI76_RS02610 0.28 -2.0 533,982 - BWI76_RS02610 0.29 -0.8 534,002 - BWI76_RS02610 0.31 -2.4 534,053 + BWI76_RS02610 0.38 -0.9 534,073 - BWI76_RS02610 0.41 -3.6 534,082 + BWI76_RS02610 0.42 -1.5 534,165 + BWI76_RS02610 0.53 -0.5 534,633 - -0.5 534,646 - -1.9 534,646 - -0.4 534,652 + -1.7 534,659 - +0.1 534,905 - BWI76_RS02615 0.26 +1.6 535,039 - BWI76_RS02615 0.39 +0.1 535,131 - BWI76_RS02615 0.47 -1.1 535,134 - BWI76_RS02615 0.48 -0.4 535,134 - BWI76_RS02615 0.48 +0.3 535,156 - BWI76_RS02615 0.50 +0.5 535,240 + BWI76_RS02615 0.57 +0.4 535,241 - BWI76_RS02615 0.58 +0.5 535,291 + BWI76_RS02615 0.62 -0.1 535,299 - -0.2 535,415 + BWI76_RS02615 0.74 +0.4
Or see this region's nucleotide sequence