Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27850

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27845 and BWI76_RS27850 are separated by 245 nucleotidesBWI76_RS27850 and BWI76_RS27855 are separated by 223 nucleotides BWI76_RS27845: BWI76_RS27845 - multidrug transporter EmrD, at 5,774,797 to 5,775,981 _RS27845 BWI76_RS27850: BWI76_RS27850 - DNA-binding transcriptional regulator DsdC, at 5,776,227 to 5,777,156 _RS27850 BWI76_RS27855: BWI76_RS27855 - D-serine transporter DsdX, at 5,777,380 to 5,778,717 _RS27855 Position (kb) 5776 5777 5778Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 5775.268 kb on + strand, within BWI76_RS27845at 5775.370 kb on + strand, within BWI76_RS27845at 5775.378 kb on - strand, within BWI76_RS27845at 5775.403 kb on - strand, within BWI76_RS27845at 5775.513 kb on - strand, within BWI76_RS27845at 5776.186 kb on - strandat 5776.308 kb on + strandat 5776.323 kb on + strand, within BWI76_RS27850at 5776.503 kb on + strand, within BWI76_RS27850at 5776.799 kb on + strand, within BWI76_RS27850at 5776.804 kb on + strand, within BWI76_RS27850at 5776.804 kb on + strand, within BWI76_RS27850at 5776.812 kb on - strand, within BWI76_RS27850at 5777.023 kb on + strand, within BWI76_RS27850at 5777.089 kb on + strandat 5777.410 kb on + strandat 5777.410 kb on + strandat 5777.418 kb on - strandat 5777.425 kb on + strandat 5777.442 kb on - strandat 5777.521 kb on - strand, within BWI76_RS27855at 5777.666 kb on + strand, within BWI76_RS27855at 5777.828 kb on - strand, within BWI76_RS27855at 5777.997 kb on + strand, within BWI76_RS27855at 5778.075 kb on + strandat 5778.075 kb on + strand, within BWI76_RS27855at 5778.075 kb on + strand, within BWI76_RS27855at 5778.075 kb on + strand, within BWI76_RS27855at 5778.098 kb on + strand, within BWI76_RS27855

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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5,775,268 + BWI76_RS27845 0.40 -0.4
5,775,370 + BWI76_RS27845 0.48 +0.4
5,775,378 - BWI76_RS27845 0.49 -1.6
5,775,403 - BWI76_RS27845 0.51 -0.4
5,775,513 - BWI76_RS27845 0.60 +0.6
5,776,186 - -0.8
5,776,308 + -0.2
5,776,323 + BWI76_RS27850 0.10 +0.3
5,776,503 + BWI76_RS27850 0.30 +6.3
5,776,799 + BWI76_RS27850 0.62 -2.3
5,776,804 + BWI76_RS27850 0.62 -0.4
5,776,804 + BWI76_RS27850 0.62 +0.6
5,776,812 - BWI76_RS27850 0.63 +0.1
5,777,023 + BWI76_RS27850 0.86 -0.2
5,777,089 + +0.5
5,777,410 + +0.5
5,777,410 + +0.1
5,777,418 - +0.2
5,777,425 + -1.4
5,777,442 - +0.3
5,777,521 - BWI76_RS27855 0.11 -0.0
5,777,666 + BWI76_RS27855 0.21 -0.0
5,777,828 - BWI76_RS27855 0.33 +0.2
5,777,997 + BWI76_RS27855 0.46 +0.2
5,778,075 + -0.0
5,778,075 + BWI76_RS27855 0.52 +0.9
5,778,075 + BWI76_RS27855 0.52 -1.3
5,778,075 + BWI76_RS27855 0.52 +0.1
5,778,098 + BWI76_RS27855 0.54 -0.8

Or see this region's nucleotide sequence