Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27340 and BWI76_RS27345 overlap by 11 nucleotides BWI76_RS27345 and BWI76_RS27350 are separated by 4 nucleotides BWI76_RS27350 and BWI76_RS27355 are separated by 198 nucleotides BWI76_RS27355 and BWI76_RS27360 are separated by 20 nucleotides BWI76_RS27360 and BWI76_RS27365 are separated by 216 nucleotides
BWI76_RS27340: BWI76_RS27340 - hypothetical protein, at 5,675,405 to 5,676,778
_RS27340
BWI76_RS27345: BWI76_RS27345 - hypothetical protein, at 5,676,768 to 5,677,493
_RS27345
BWI76_RS27350: BWI76_RS27350 - hypothetical protein, at 5,677,498 to 5,678,175
_RS27350
BWI76_RS27355: BWI76_RS27355 - 50S ribosomal protein L33, at 5,678,374 to 5,678,541
_RS27355
BWI76_RS27360: BWI76_RS27360 - 50S ribosomal protein L28, at 5,678,562 to 5,678,798
_RS27360
BWI76_RS27365: BWI76_RS27365 - hypothetical protein, at 5,679,015 to 5,679,680
_RS27365
Position (kb) 5677
5678
5679 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 5676.513 kb on + strand, within BWI76_RS27340 at 5676.600 kb on + strand, within BWI76_RS27340 at 5676.602 kb on - strand, within BWI76_RS27340 at 5676.616 kb on + strand, within BWI76_RS27340 at 5676.785 kb on + strand at 5676.880 kb on - strand, within BWI76_RS27345 at 5676.929 kb on - strand, within BWI76_RS27345 at 5676.941 kb on + strand, within BWI76_RS27345 at 5676.941 kb on + strand, within BWI76_RS27345 at 5676.981 kb on - strand, within BWI76_RS27345 at 5677.039 kb on - strand, within BWI76_RS27345 at 5677.145 kb on + strand, within BWI76_RS27345 at 5677.249 kb on + strand, within BWI76_RS27345 at 5677.255 kb on - strand, within BWI76_RS27345 at 5677.324 kb on - strand, within BWI76_RS27345 at 5677.369 kb on - strand, within BWI76_RS27345 at 5677.553 kb on + strand at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.660 kb on - strand, within BWI76_RS27350 at 5677.739 kb on - strand, within BWI76_RS27350 at 5677.749 kb on - strand, within BWI76_RS27350 at 5677.826 kb on + strand, within BWI76_RS27350 at 5677.890 kb on + strand, within BWI76_RS27350 at 5677.964 kb on - strand, within BWI76_RS27350 at 5678.120 kb on + strand at 5678.121 kb on - strand at 5678.130 kb on + strand at 5678.321 kb on - strand at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.146 kb on + strand, within BWI76_RS27365
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,676,513 + BWI76_RS27340 0.81 +0.0 5,676,600 + BWI76_RS27340 0.87 +0.2 5,676,602 - BWI76_RS27340 0.87 +0.2 5,676,616 + BWI76_RS27340 0.88 +1.1 5,676,785 + -0.1 5,676,880 - BWI76_RS27345 0.15 -1.0 5,676,929 - BWI76_RS27345 0.22 -0.4 5,676,941 + BWI76_RS27345 0.24 +6.2 5,676,941 + BWI76_RS27345 0.24 +1.1 5,676,981 - BWI76_RS27345 0.29 -0.8 5,677,039 - BWI76_RS27345 0.37 +0.6 5,677,145 + BWI76_RS27345 0.52 -0.3 5,677,249 + BWI76_RS27345 0.66 -0.1 5,677,255 - BWI76_RS27345 0.67 -2.6 5,677,324 - BWI76_RS27345 0.77 +0.1 5,677,369 - BWI76_RS27345 0.83 +0.9 5,677,553 + -0.7 5,677,627 - BWI76_RS27350 0.19 -0.1 5,677,627 - BWI76_RS27350 0.19 +0.5 5,677,660 - BWI76_RS27350 0.24 -1.5 5,677,739 - BWI76_RS27350 0.36 -0.5 5,677,749 - BWI76_RS27350 0.37 +3.5 5,677,826 + BWI76_RS27350 0.48 +1.0 5,677,890 + BWI76_RS27350 0.58 +1.6 5,677,964 - BWI76_RS27350 0.69 +0.6 5,678,120 + +0.4 5,678,121 - +0.2 5,678,130 + -1.6 5,678,321 - +0.2 5,679,146 + BWI76_RS27365 0.20 +0.5 5,679,146 + BWI76_RS27365 0.20 +2.4
Or see this region's nucleotide sequence