Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26025 and BWI76_RS26030 overlap by 4 nucleotides BWI76_RS26030 and BWI76_RS26035 are separated by 35 nucleotides BWI76_RS26035 and BWI76_RS26040 overlap by 8 nucleotides
BWI76_RS26025: BWI76_RS26025 - MFS transporter TsgA, at 5,377,467 to 5,378,651
_RS26025
BWI76_RS26030: BWI76_RS26030 - cytosine deaminase, at 5,378,648 to 5,379,970
_RS26030
BWI76_RS26035: BWI76_RS26035 - hypothetical protein, at 5,380,006 to 5,380,218
_RS26035
BWI76_RS26040: BWI76_RS26040 - nitrite reductase large subunit, at 5,380,211 to 5,382,754
_RS26040
Position (kb) 5378
5379
5380 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 5377.655 kb on + strand, within BWI76_RS26025 at 5377.724 kb on - strand, within BWI76_RS26025 at 5377.788 kb on - strand, within BWI76_RS26025 at 5377.790 kb on + strand, within BWI76_RS26025 at 5378.114 kb on + strand, within BWI76_RS26025 at 5378.116 kb on + strand, within BWI76_RS26025 at 5378.116 kb on + strand, within BWI76_RS26025 at 5378.124 kb on - strand, within BWI76_RS26025 at 5378.313 kb on + strand, within BWI76_RS26025 at 5378.367 kb on - strand, within BWI76_RS26025 at 5378.624 kb on + strand at 5378.661 kb on - strand at 5378.799 kb on - strand, within BWI76_RS26030 at 5378.889 kb on - strand, within BWI76_RS26030 at 5379.014 kb on - strand, within BWI76_RS26030 at 5379.024 kb on - strand at 5379.094 kb on - strand, within BWI76_RS26030 at 5379.217 kb on + strand at 5379.449 kb on - strand, within BWI76_RS26030 at 5379.526 kb on - strand, within BWI76_RS26030 at 5379.580 kb on + strand, within BWI76_RS26030 at 5379.671 kb on - strand, within BWI76_RS26030 at 5379.951 kb on - strand at 5379.971 kb on - strand at 5380.398 kb on - strand at 5380.428 kb on + strand at 5380.428 kb on + strand at 5380.488 kb on + strand, within BWI76_RS26040 at 5380.740 kb on + strand, within BWI76_RS26040 at 5380.878 kb on - strand, within BWI76_RS26040
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 5,377,655 + BWI76_RS26025 0.16 -0.2 5,377,724 - BWI76_RS26025 0.22 +0.3 5,377,788 - BWI76_RS26025 0.27 -0.3 5,377,790 + BWI76_RS26025 0.27 -0.4 5,378,114 + BWI76_RS26025 0.55 +0.1 5,378,116 + BWI76_RS26025 0.55 -0.2 5,378,116 + BWI76_RS26025 0.55 -0.2 5,378,124 - BWI76_RS26025 0.55 -0.3 5,378,313 + BWI76_RS26025 0.71 -1.2 5,378,367 - BWI76_RS26025 0.76 -0.1 5,378,624 + -0.7 5,378,661 - +1.0 5,378,799 - BWI76_RS26030 0.11 -0.4 5,378,889 - BWI76_RS26030 0.18 -0.8 5,379,014 - BWI76_RS26030 0.28 +0.9 5,379,024 - +0.0 5,379,094 - BWI76_RS26030 0.34 -2.2 5,379,217 + +1.4 5,379,449 - BWI76_RS26030 0.61 +0.8 5,379,526 - BWI76_RS26030 0.66 +6.7 5,379,580 + BWI76_RS26030 0.70 -0.7 5,379,671 - BWI76_RS26030 0.77 -0.6 5,379,951 - -0.2 5,379,971 - -0.1 5,380,398 - -0.1 5,380,428 + -0.8 5,380,428 + +0.2 5,380,488 + BWI76_RS26040 0.11 -0.5 5,380,740 + BWI76_RS26040 0.21 +0.7 5,380,878 - BWI76_RS26040 0.26 -1.4
Or see this region's nucleotide sequence