Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23740

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23735 and BWI76_RS23740 are separated by 320 nucleotidesBWI76_RS23740 and BWI76_RS23745 are separated by 392 nucleotidesBWI76_RS23745 and BWI76_RS23750 are separated by 9 nucleotides BWI76_RS23735: BWI76_RS23735 - sugar diacid utilization regulator, at 4,955,236 to 4,956,393 _RS23735 BWI76_RS23740: BWI76_RS23740 - MFS transporter, at 4,956,714 to 4,958,363 _RS23740 BWI76_RS23745: BWI76_RS23745 - arsenate reductase, at 4,958,756 to 4,959,181 _RS23745 BWI76_RS23750: BWI76_RS23750 - arsenical efflux pump membrane protein ArsB, at 4,959,191 to 4,960,483 _RS23750 Position (kb) 4956 4957 4958 4959Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4955.987 kb on - strand, within BWI76_RS23735at 4956.149 kb on - strand, within BWI76_RS23735at 4956.233 kb on - strand, within BWI76_RS23735at 4956.341 kb on + strandat 4956.383 kb on + strandat 4956.491 kb on - strandat 4956.752 kb on - strandat 4956.855 kb on + strandat 4956.855 kb on + strandat 4956.863 kb on - strandat 4956.863 kb on - strandat 4957.057 kb on + strand, within BWI76_RS23740at 4957.198 kb on + strand, within BWI76_RS23740at 4957.208 kb on + strand, within BWI76_RS23740at 4957.315 kb on - strand, within BWI76_RS23740at 4957.520 kb on - strand, within BWI76_RS23740at 4957.552 kb on - strand, within BWI76_RS23740at 4957.552 kb on - strand, within BWI76_RS23740at 4957.563 kb on + strand, within BWI76_RS23740at 4957.666 kb on + strand, within BWI76_RS23740at 4957.666 kb on + strand, within BWI76_RS23740at 4957.673 kb on + strand, within BWI76_RS23740at 4957.748 kb on + strand, within BWI76_RS23740at 4957.843 kb on - strand, within BWI76_RS23740at 4957.878 kb on + strand, within BWI76_RS23740at 4958.214 kb on + strandat 4958.222 kb on - strandat 4958.281 kb on - strandat 4958.422 kb on + strandat 4958.476 kb on - strandat 4958.481 kb on - strandat 4958.660 kb on + strandat 4958.734 kb on - strandat 4958.854 kb on + strand, within BWI76_RS23745at 4958.888 kb on + strand, within BWI76_RS23745at 4959.042 kb on + strand, within BWI76_RS23745at 4959.240 kb on - strandat 4959.252 kb on - strandat 4959.324 kb on + strand, within BWI76_RS23750

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,955,987 - BWI76_RS23735 0.65 -0.8
4,956,149 - BWI76_RS23735 0.79 -1.1
4,956,233 - BWI76_RS23735 0.86 -0.1
4,956,341 + +1.0
4,956,383 + +1.0
4,956,491 - +0.0
4,956,752 - +0.1
4,956,855 + +0.2
4,956,855 + -1.0
4,956,863 - +0.7
4,956,863 - -0.3
4,957,057 + BWI76_RS23740 0.21 -0.8
4,957,198 + BWI76_RS23740 0.29 +0.7
4,957,208 + BWI76_RS23740 0.30 +2.5
4,957,315 - BWI76_RS23740 0.36 +0.8
4,957,520 - BWI76_RS23740 0.49 +0.7
4,957,552 - BWI76_RS23740 0.51 +0.3
4,957,552 - BWI76_RS23740 0.51 +5.9
4,957,563 + BWI76_RS23740 0.51 -2.4
4,957,666 + BWI76_RS23740 0.58 +1.0
4,957,666 + BWI76_RS23740 0.58 +0.1
4,957,673 + BWI76_RS23740 0.58 -0.4
4,957,748 + BWI76_RS23740 0.63 +0.9
4,957,843 - BWI76_RS23740 0.68 -0.2
4,957,878 + BWI76_RS23740 0.71 +0.3
4,958,214 + +0.5
4,958,222 - -0.1
4,958,281 - +0.2
4,958,422 + +0.3
4,958,476 - +1.0
4,958,481 - +0.1
4,958,660 + +1.0
4,958,734 - -1.1
4,958,854 + BWI76_RS23745 0.23 +0.4
4,958,888 + BWI76_RS23745 0.31 -0.8
4,959,042 + BWI76_RS23745 0.67 -1.1
4,959,240 - -0.1
4,959,252 - +2.6
4,959,324 + BWI76_RS23750 0.10 +0.1

Or see this region's nucleotide sequence