Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23735 and BWI76_RS23740 are separated by 320 nucleotides BWI76_RS23740 and BWI76_RS23745 are separated by 392 nucleotides BWI76_RS23745 and BWI76_RS23750 are separated by 9 nucleotides
BWI76_RS23735: BWI76_RS23735 - sugar diacid utilization regulator, at 4,955,236 to 4,956,393
_RS23735
BWI76_RS23740: BWI76_RS23740 - MFS transporter, at 4,956,714 to 4,958,363
_RS23740
BWI76_RS23745: BWI76_RS23745 - arsenate reductase, at 4,958,756 to 4,959,181
_RS23745
BWI76_RS23750: BWI76_RS23750 - arsenical efflux pump membrane protein ArsB, at 4,959,191 to 4,960,483
_RS23750
Position (kb)
4956
4957
4958
4959 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4955.987 kb on - strand, within BWI76_RS23735 at 4956.149 kb on - strand, within BWI76_RS23735 at 4956.233 kb on - strand, within BWI76_RS23735 at 4956.341 kb on + strand at 4956.383 kb on + strand at 4956.491 kb on - strand at 4956.752 kb on - strand at 4956.855 kb on + strand at 4956.855 kb on + strand at 4956.863 kb on - strand at 4956.863 kb on - strand at 4957.057 kb on + strand, within BWI76_RS23740 at 4957.198 kb on + strand, within BWI76_RS23740 at 4957.208 kb on + strand, within BWI76_RS23740 at 4957.315 kb on - strand, within BWI76_RS23740 at 4957.520 kb on - strand, within BWI76_RS23740 at 4957.552 kb on - strand, within BWI76_RS23740 at 4957.552 kb on - strand, within BWI76_RS23740 at 4957.563 kb on + strand, within BWI76_RS23740 at 4957.666 kb on + strand, within BWI76_RS23740 at 4957.666 kb on + strand, within BWI76_RS23740 at 4957.673 kb on + strand, within BWI76_RS23740 at 4957.748 kb on + strand, within BWI76_RS23740 at 4957.843 kb on - strand, within BWI76_RS23740 at 4957.878 kb on + strand, within BWI76_RS23740 at 4958.214 kb on + strand at 4958.222 kb on - strand at 4958.281 kb on - strand at 4958.422 kb on + strand at 4958.476 kb on - strand at 4958.481 kb on - strand at 4958.660 kb on + strand at 4958.734 kb on - strand at 4958.854 kb on + strand, within BWI76_RS23745 at 4958.888 kb on + strand, within BWI76_RS23745 at 4959.042 kb on + strand, within BWI76_RS23745 at 4959.240 kb on - strand at 4959.252 kb on - strand at 4959.324 kb on + strand, within BWI76_RS23750
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,955,987 - BWI76_RS23735 0.65 -0.8 4,956,149 - BWI76_RS23735 0.79 -1.1 4,956,233 - BWI76_RS23735 0.86 -0.1 4,956,341 + +1.0 4,956,383 + +1.0 4,956,491 - +0.0 4,956,752 - +0.1 4,956,855 + +0.2 4,956,855 + -1.0 4,956,863 - +0.7 4,956,863 - -0.3 4,957,057 + BWI76_RS23740 0.21 -0.8 4,957,198 + BWI76_RS23740 0.29 +0.7 4,957,208 + BWI76_RS23740 0.30 +2.5 4,957,315 - BWI76_RS23740 0.36 +0.8 4,957,520 - BWI76_RS23740 0.49 +0.7 4,957,552 - BWI76_RS23740 0.51 +0.3 4,957,552 - BWI76_RS23740 0.51 +5.9 4,957,563 + BWI76_RS23740 0.51 -2.4 4,957,666 + BWI76_RS23740 0.58 +1.0 4,957,666 + BWI76_RS23740 0.58 +0.1 4,957,673 + BWI76_RS23740 0.58 -0.4 4,957,748 + BWI76_RS23740 0.63 +0.9 4,957,843 - BWI76_RS23740 0.68 -0.2 4,957,878 + BWI76_RS23740 0.71 +0.3 4,958,214 + +0.5 4,958,222 - -0.1 4,958,281 - +0.2 4,958,422 + +0.3 4,958,476 - +1.0 4,958,481 - +0.1 4,958,660 + +1.0 4,958,734 - -1.1 4,958,854 + BWI76_RS23745 0.23 +0.4 4,958,888 + BWI76_RS23745 0.31 -0.8 4,959,042 + BWI76_RS23745 0.67 -1.1 4,959,240 - -0.1 4,959,252 - +2.6 4,959,324 + BWI76_RS23750 0.10 +0.1
Or see this region's nucleotide sequence