Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23175 and BWI76_RS23180 overlap by 4 nucleotides BWI76_RS23180 and BWI76_RS23185 are separated by 2 nucleotides BWI76_RS23185 and BWI76_RS23190 overlap by 1 nucleotides BWI76_RS23190 and BWI76_RS23195 are separated by 4 nucleotides
BWI76_RS23175: BWI76_RS23175 - propanediol utilization protein, at 4,828,369 to 4,829,481
_RS23175
BWI76_RS23180: BWI76_RS23180 - NADH dehydrogenase, at 4,829,478 to 4,830,833
_RS23180
BWI76_RS23185: BWI76_RS23185 - propanediol utilization: polyhedral bodies pduT, at 4,830,836 to 4,831,390
_RS23185
BWI76_RS23190: BWI76_RS23190 - propanediol utilization protein PduU, at 4,831,390 to 4,831,740
_RS23190
BWI76_RS23195: BWI76_RS23195 - ethanolamine utilization protein EutP, at 4,831,745 to 4,832,197
_RS23195
Position (kb) 4829
4830
4831 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 4828.491 kb on + strand, within BWI76_RS23175 at 4828.499 kb on - strand, within BWI76_RS23175 at 4828.579 kb on + strand, within BWI76_RS23175 at 4828.739 kb on + strand, within BWI76_RS23175 at 4828.747 kb on - strand, within BWI76_RS23175 at 4828.784 kb on + strand, within BWI76_RS23175 at 4828.825 kb on - strand, within BWI76_RS23175 at 4829.095 kb on + strand, within BWI76_RS23175 at 4829.168 kb on - strand, within BWI76_RS23175 at 4829.449 kb on - strand at 4829.475 kb on + strand at 4829.483 kb on - strand at 4829.648 kb on + strand, within BWI76_RS23180 at 4829.648 kb on + strand, within BWI76_RS23180 at 4829.689 kb on - strand, within BWI76_RS23180 at 4830.148 kb on - strand, within BWI76_RS23180 at 4830.286 kb on + strand, within BWI76_RS23180 at 4830.324 kb on - strand, within BWI76_RS23180 at 4830.393 kb on + strand, within BWI76_RS23180 at 4830.401 kb on - strand, within BWI76_RS23180 at 4830.669 kb on + strand, within BWI76_RS23180 at 4830.684 kb on + strand, within BWI76_RS23180 at 4830.821 kb on + strand at 4830.890 kb on - strand at 4831.000 kb on - strand, within BWI76_RS23185 at 4831.077 kb on - strand, within BWI76_RS23185 at 4831.094 kb on + strand, within BWI76_RS23185 at 4831.420 kb on + strand at 4831.420 kb on + strand at 4831.428 kb on - strand, within BWI76_RS23190 at 4831.469 kb on - strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190 at 4831.538 kb on + strand, within BWI76_RS23190
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,828,491 + BWI76_RS23175 0.11 -0.0 4,828,499 - BWI76_RS23175 0.12 -2.5 4,828,579 + BWI76_RS23175 0.19 -0.3 4,828,739 + BWI76_RS23175 0.33 +0.0 4,828,747 - BWI76_RS23175 0.34 -0.7 4,828,784 + BWI76_RS23175 0.37 -1.2 4,828,825 - BWI76_RS23175 0.41 -0.1 4,829,095 + BWI76_RS23175 0.65 -0.3 4,829,168 - BWI76_RS23175 0.72 +0.1 4,829,449 - -1.0 4,829,475 + -0.6 4,829,483 - +0.3 4,829,648 + BWI76_RS23180 0.13 -0.1 4,829,648 + BWI76_RS23180 0.13 +1.5 4,829,689 - BWI76_RS23180 0.16 +0.7 4,830,148 - BWI76_RS23180 0.49 -0.1 4,830,286 + BWI76_RS23180 0.60 -0.0 4,830,324 - BWI76_RS23180 0.62 +4.9 4,830,393 + BWI76_RS23180 0.67 -0.0 4,830,401 - BWI76_RS23180 0.68 +0.4 4,830,669 + BWI76_RS23180 0.88 +0.3 4,830,684 + BWI76_RS23180 0.89 +7.1 4,830,821 + +0.2 4,830,890 - +0.4 4,831,000 - BWI76_RS23185 0.30 -0.9 4,831,077 - BWI76_RS23185 0.43 +2.0 4,831,094 + BWI76_RS23185 0.46 -0.5 4,831,420 + +0.6 4,831,420 + +0.8 4,831,428 - BWI76_RS23190 0.11 -0.1 4,831,469 - BWI76_RS23190 0.23 -0.3 4,831,538 + BWI76_RS23190 0.42 -0.3 4,831,538 + BWI76_RS23190 0.42 +0.2
Or see this region's nucleotide sequence