Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22800

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22795 and BWI76_RS22800 are separated by 227 nucleotidesBWI76_RS22800 and BWI76_RS22805 are separated by 59 nucleotides BWI76_RS22795: BWI76_RS22795 - CTP synthetase, at 4,752,035 to 4,753,672 _RS22795 BWI76_RS22800: BWI76_RS22800 - nucleoside triphosphate pyrophosphohydrolase, at 4,753,900 to 4,754,691 _RS22800 BWI76_RS22805: BWI76_RS22805 - GTP diphosphokinase, at 4,754,751 to 4,756,988 _RS22805 Position (kb) 4753 4754 4755Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 4753.793 kb on + strandat 4753.793 kb on + strandat 4753.964 kb on - strandat 4754.343 kb on + strand, within BWI76_RS22800at 4754.483 kb on + strand, within BWI76_RS22800at 4754.495 kb on + strand, within BWI76_RS22800at 4754.495 kb on + strand, within BWI76_RS22800at 4754.512 kb on + strand, within BWI76_RS22800at 4754.563 kb on - strand, within BWI76_RS22800at 4754.565 kb on + strand, within BWI76_RS22800at 4754.573 kb on - strand, within BWI76_RS22800at 4754.648 kb on + strandat 4754.666 kb on - strandat 4754.825 kb on - strandat 4754.982 kb on - strand, within BWI76_RS22805at 4755.009 kb on - strand, within BWI76_RS22805at 4755.251 kb on + strand, within BWI76_RS22805at 4755.293 kb on - strand, within BWI76_RS22805at 4755.422 kb on - strand, within BWI76_RS22805at 4755.424 kb on + strand, within BWI76_RS22805at 4755.461 kb on - strand, within BWI76_RS22805

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,753,793 + +0.5
4,753,793 + +0.3
4,753,964 - -1.0
4,754,343 + BWI76_RS22800 0.56 +1.5
4,754,483 + BWI76_RS22800 0.74 +0.1
4,754,495 + BWI76_RS22800 0.75 +0.8
4,754,495 + BWI76_RS22800 0.75 +5.2
4,754,512 + BWI76_RS22800 0.77 +1.6
4,754,563 - BWI76_RS22800 0.84 +1.1
4,754,565 + BWI76_RS22800 0.84 -0.5
4,754,573 - BWI76_RS22800 0.85 -0.3
4,754,648 + -0.3
4,754,666 - +0.6
4,754,825 - +0.7
4,754,982 - BWI76_RS22805 0.10 +1.0
4,755,009 - BWI76_RS22805 0.12 +2.0
4,755,251 + BWI76_RS22805 0.22 -0.7
4,755,293 - BWI76_RS22805 0.24 +0.9
4,755,422 - BWI76_RS22805 0.30 +2.0
4,755,424 + BWI76_RS22805 0.30 +6.0
4,755,461 - BWI76_RS22805 0.32 +1.0

Or see this region's nucleotide sequence