Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22785

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22780 and BWI76_RS22785 are separated by 459 nucleotidesBWI76_RS22785 and BWI76_RS22790 are separated by 67 nucleotides BWI76_RS22780: BWI76_RS22780 - 7-carboxy-7-deazaguanine synthase QueE, at 4,748,348 to 4,749,019 _RS22780 BWI76_RS22785: BWI76_RS22785 - NAD(P)H-binding protein, at 4,749,479 to 4,750,588 _RS22785 BWI76_RS22790: BWI76_RS22790 - phosphopyruvate hydratase, at 4,750,656 to 4,751,954 _RS22790 Position (kb) 4749 4750 4751Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4748.605 kb on + strand, within BWI76_RS22780at 4748.613 kb on - strand, within BWI76_RS22780at 4748.627 kb on + strand, within BWI76_RS22780at 4748.635 kb on - strand, within BWI76_RS22780at 4748.635 kb on - strand, within BWI76_RS22780at 4748.774 kb on - strand, within BWI76_RS22780at 4748.779 kb on - strand, within BWI76_RS22780at 4748.833 kb on + strand, within BWI76_RS22780at 4748.884 kb on + strand, within BWI76_RS22780at 4748.972 kb on + strandat 4748.974 kb on - strandat 4748.987 kb on + strandat 4748.988 kb on + strandat 4748.996 kb on - strandat 4749.014 kb on - strandat 4749.030 kb on + strandat 4749.068 kb on + strandat 4749.073 kb on + strandat 4749.073 kb on + strandat 4749.079 kb on + strandat 4749.081 kb on - strandat 4749.082 kb on - strandat 4749.084 kb on + strandat 4749.118 kb on + strandat 4749.126 kb on - strandat 4749.128 kb on + strandat 4749.134 kb on - strandat 4749.134 kb on - strandat 4749.156 kb on - strandat 4749.196 kb on + strandat 4749.204 kb on - strandat 4749.204 kb on - strandat 4749.238 kb on + strandat 4749.238 kb on + strandat 4749.238 kb on + strandat 4749.246 kb on - strandat 4749.246 kb on - strandat 4749.246 kb on - strandat 4749.246 kb on - strandat 4749.305 kb on - strandat 4749.305 kb on - strandat 4749.330 kb on + strandat 4749.350 kb on - strandat 4749.389 kb on - strandat 4749.459 kb on + strandat 4749.467 kb on - strandat 4749.473 kb on + strandat 4749.517 kb on + strandat 4749.517 kb on + strandat 4749.517 kb on + strandat 4749.522 kb on + strandat 4749.522 kb on + strandat 4749.527 kb on + strandat 4749.527 kb on + strandat 4749.527 kb on + strandat 4749.527 kb on + strandat 4749.527 kb on + strandat 4749.527 kb on + strandat 4749.527 kb on + strandat 4749.535 kb on - strandat 4749.535 kb on - strandat 4749.572 kb on + strandat 4749.572 kb on - strandat 4749.572 kb on - strandat 4749.574 kb on - strandat 4749.580 kb on - strandat 4749.580 kb on - strandat 4749.587 kb on + strandat 4749.594 kb on + strand, within BWI76_RS22785at 4749.608 kb on + strand, within BWI76_RS22785at 4749.612 kb on + strand, within BWI76_RS22785at 4749.613 kb on + strand, within BWI76_RS22785at 4749.613 kb on + strand, within BWI76_RS22785at 4749.619 kb on + strand, within BWI76_RS22785at 4749.619 kb on + strand, within BWI76_RS22785at 4749.626 kb on - strand, within BWI76_RS22785at 4749.626 kb on - strand, within BWI76_RS22785at 4749.662 kb on + strand, within BWI76_RS22785at 4749.662 kb on + strand, within BWI76_RS22785at 4749.664 kb on + strand, within BWI76_RS22785at 4749.675 kb on + strand, within BWI76_RS22785at 4749.679 kb on - strand, within BWI76_RS22785at 4749.681 kb on - strand, within BWI76_RS22785at 4749.686 kb on - strand, within BWI76_RS22785at 4749.691 kb on - strand, within BWI76_RS22785at 4749.752 kb on - strand, within BWI76_RS22785at 4749.757 kb on - strand, within BWI76_RS22785at 4749.847 kb on + strand, within BWI76_RS22785at 4749.897 kb on - strand, within BWI76_RS22785at 4749.897 kb on - strand, within BWI76_RS22785at 4750.121 kb on - strand, within BWI76_RS22785at 4750.432 kb on - strand, within BWI76_RS22785at 4750.467 kb on + strand, within BWI76_RS22785

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,748,605 + BWI76_RS22780 0.38 -1.0
4,748,613 - BWI76_RS22780 0.39 +0.2
4,748,627 + BWI76_RS22780 0.42 +0.5
4,748,635 - BWI76_RS22780 0.43 +4.9
4,748,635 - BWI76_RS22780 0.43 -1.3
4,748,774 - BWI76_RS22780 0.63 -0.2
4,748,779 - BWI76_RS22780 0.64 -0.5
4,748,833 + BWI76_RS22780 0.72 +1.1
4,748,884 + BWI76_RS22780 0.80 -0.4
4,748,972 + +0.5
4,748,974 - -3.0
4,748,987 + +2.7
4,748,988 + -0.4
4,748,996 - +0.4
4,749,014 - +0.2
4,749,030 + +1.5
4,749,068 + -0.8
4,749,073 + +0.9
4,749,073 + +0.4
4,749,079 + -0.0
4,749,081 - +0.4
4,749,082 - +2.3
4,749,084 + +0.2
4,749,118 + -0.1
4,749,126 - -0.1
4,749,128 + -0.2
4,749,134 - +0.4
4,749,134 - +0.4
4,749,156 - -0.2
4,749,196 + +1.1
4,749,204 - -0.4
4,749,204 - -0.0
4,749,238 + +1.0
4,749,238 + +0.5
4,749,238 + +0.4
4,749,246 - -0.4
4,749,246 - -1.0
4,749,246 - -0.4
4,749,246 - +1.3
4,749,305 - -0.0
4,749,305 - +0.1
4,749,330 + +0.2
4,749,350 - -0.4
4,749,389 - -1.8
4,749,459 + -0.1
4,749,467 - -0.2
4,749,473 + -0.9
4,749,517 + +0.6
4,749,517 + -1.9
4,749,517 + +0.5
4,749,522 + -0.1
4,749,522 + +0.3
4,749,527 + -0.1
4,749,527 + +1.8
4,749,527 + -0.2
4,749,527 + +3.0
4,749,527 + -0.7
4,749,527 + -1.3
4,749,527 + +0.4
4,749,535 - +2.7
4,749,535 - -1.3
4,749,572 + -0.5
4,749,572 - +0.8
4,749,572 - -0.8
4,749,574 - -0.9
4,749,580 - +0.3
4,749,580 - -0.1
4,749,587 + -0.0
4,749,594 + BWI76_RS22785 0.10 -0.3
4,749,608 + BWI76_RS22785 0.12 +0.5
4,749,612 + BWI76_RS22785 0.12 -0.1
4,749,613 + BWI76_RS22785 0.12 -1.4
4,749,613 + BWI76_RS22785 0.12 -0.9
4,749,619 + BWI76_RS22785 0.13 -0.5
4,749,619 + BWI76_RS22785 0.13 -0.1
4,749,626 - BWI76_RS22785 0.13 -0.4
4,749,626 - BWI76_RS22785 0.13 +0.7
4,749,662 + BWI76_RS22785 0.16 +0.3
4,749,662 + BWI76_RS22785 0.16 +0.5
4,749,664 + BWI76_RS22785 0.17 -0.8
4,749,675 + BWI76_RS22785 0.18 -0.7
4,749,679 - BWI76_RS22785 0.18 +1.7
4,749,681 - BWI76_RS22785 0.18 +0.5
4,749,686 - BWI76_RS22785 0.19 +0.4
4,749,691 - BWI76_RS22785 0.19 +0.1
4,749,752 - BWI76_RS22785 0.25 +0.5
4,749,757 - BWI76_RS22785 0.25 +1.6
4,749,847 + BWI76_RS22785 0.33 -0.6
4,749,897 - BWI76_RS22785 0.38 -0.0
4,749,897 - BWI76_RS22785 0.38 +0.4
4,750,121 - BWI76_RS22785 0.58 -0.3
4,750,432 - BWI76_RS22785 0.86 +1.0
4,750,467 + BWI76_RS22785 0.89 +2.1

Or see this region's nucleotide sequence