Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22615 and BWI76_RS22620 overlap by 1 nucleotides BWI76_RS22620 and BWI76_RS22625 are separated by 170 nucleotides BWI76_RS22625 and BWI76_RS22630 overlap by 4 nucleotides BWI76_RS22630 and BWI76_RS22635 are separated by 107 nucleotides
BWI76_RS22615: BWI76_RS22615 - phenolic acid decarboxylase subunit C, at 4,714,847 to 4,716,274
_RS22615
BWI76_RS22620: BWI76_RS22620 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,716,274 to 4,716,867
_RS22620
BWI76_RS22625: BWI76_RS22625 - transcriptional regulator, at 4,717,038 to 4,717,457
_RS22625
BWI76_RS22630: BWI76_RS22630 - LysR family transcriptional regulator, at 4,717,454 to 4,718,341
_RS22630
BWI76_RS22635: BWI76_RS22635 - MFS transporter, at 4,718,449 to 4,719,663
_RS22635
Position (kb) 4717
4718 Strain fitness (log2 ratio) -1
0
1
2 at 4716.048 kb on - strand, within BWI76_RS22615 at 4716.186 kb on + strand at 4716.314 kb on - strand at 4716.398 kb on + strand, within BWI76_RS22620 at 4716.408 kb on + strand, within BWI76_RS22620 at 4716.818 kb on + strand at 4717.096 kb on - strand, within BWI76_RS22625 at 4717.503 kb on + strand at 4717.513 kb on - strand at 4717.569 kb on + strand, within BWI76_RS22630 at 4717.715 kb on + strand, within BWI76_RS22630 at 4717.731 kb on + strand, within BWI76_RS22630 at 4717.805 kb on + strand, within BWI76_RS22630 at 4718.126 kb on - strand, within BWI76_RS22630 at 4718.250 kb on + strand, within BWI76_RS22630 at 4718.258 kb on - strand at 4718.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,716,048 - BWI76_RS22615 0.84 -0.7 4,716,186 + -0.3 4,716,314 - -1.0 4,716,398 + BWI76_RS22620 0.21 -0.4 4,716,408 + BWI76_RS22620 0.23 -0.1 4,716,818 + -0.5 4,717,096 - BWI76_RS22625 0.14 -1.2 4,717,503 + +0.1 4,717,513 - -0.3 4,717,569 + BWI76_RS22630 0.13 -0.1 4,717,715 + BWI76_RS22630 0.29 +0.9 4,717,731 + BWI76_RS22630 0.31 +0.1 4,717,805 + BWI76_RS22630 0.40 +1.8 4,718,126 - BWI76_RS22630 0.76 +1.1 4,718,250 + BWI76_RS22630 0.90 -0.2 4,718,258 - -0.5 4,718,269 - +2.6
Or see this region's nucleotide sequence