Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21695 and BWI76_RS21700 are separated by 665 nucleotides BWI76_RS21700 and BWI76_RS21705 are separated by 87 nucleotides
BWI76_RS21695: BWI76_RS21695 - glycosyl transferase family protein, at 4,536,958 to 4,537,947
_RS21695
BWI76_RS21700: BWI76_RS21700 - AraC family transcriptional regulator, at 4,538,613 to 4,539,407
_RS21700
BWI76_RS21705: BWI76_RS21705 - MFS transporter, at 4,539,495 to 4,540,685
_RS21705
Position (kb)
4538
4539
4540 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 4537.623 kb on + strand, within BWI76_RS21695 at 4537.771 kb on - strand, within BWI76_RS21695 at 4537.776 kb on + strand, within BWI76_RS21695 at 4537.789 kb on + strand, within BWI76_RS21695 at 4537.877 kb on - strand at 4537.879 kb on - strand at 4537.879 kb on - strand at 4537.884 kb on - strand at 4537.899 kb on - strand at 4537.917 kb on + strand at 4537.984 kb on + strand at 4537.992 kb on - strand at 4538.052 kb on + strand at 4538.062 kb on + strand at 4538.070 kb on - strand at 4538.070 kb on - strand at 4538.096 kb on + strand at 4538.127 kb on + strand at 4538.151 kb on + strand at 4538.164 kb on - strand at 4538.217 kb on + strand at 4538.328 kb on - strand at 4538.395 kb on + strand at 4538.395 kb on + strand at 4538.403 kb on + strand at 4538.403 kb on - strand at 4538.409 kb on + strand at 4538.417 kb on - strand at 4538.417 kb on - strand at 4538.424 kb on + strand at 4538.426 kb on - strand at 4538.432 kb on - strand at 4538.432 kb on - strand at 4538.432 kb on - strand at 4538.432 kb on - strand at 4538.611 kb on + strand at 4538.652 kb on - strand at 4538.662 kb on - strand at 4538.667 kb on - strand at 4538.703 kb on + strand, within BWI76_RS21700 at 4538.710 kb on + strand, within BWI76_RS21700 at 4538.715 kb on + strand, within BWI76_RS21700 at 4538.718 kb on + strand, within BWI76_RS21700 at 4538.723 kb on - strand, within BWI76_RS21700 at 4538.820 kb on + strand, within BWI76_RS21700 at 4538.849 kb on - strand, within BWI76_RS21700 at 4538.857 kb on - strand, within BWI76_RS21700 at 4538.895 kb on - strand, within BWI76_RS21700 at 4539.045 kb on + strand, within BWI76_RS21700 at 4539.168 kb on + strand, within BWI76_RS21700 at 4539.250 kb on - strand, within BWI76_RS21700 at 4539.369 kb on - strand at 4539.369 kb on - strand at 4539.374 kb on + strand at 4539.510 kb on + strand at 4539.626 kb on + strand, within BWI76_RS21705 at 4539.636 kb on - strand, within BWI76_RS21705 at 4539.682 kb on + strand, within BWI76_RS21705 at 4539.725 kb on - strand, within BWI76_RS21705 at 4539.725 kb on - strand, within BWI76_RS21705 at 4539.775 kb on + strand, within BWI76_RS21705 at 4539.788 kb on + strand, within BWI76_RS21705 at 4539.834 kb on + strand, within BWI76_RS21705 at 4539.842 kb on - strand, within BWI76_RS21705 at 4539.853 kb on + strand, within BWI76_RS21705 at 4539.943 kb on + strand, within BWI76_RS21705 at 4539.979 kb on - strand, within BWI76_RS21705 at 4540.116 kb on + strand, within BWI76_RS21705 at 4540.139 kb on + strand, within BWI76_RS21705 at 4540.212 kb on - strand, within BWI76_RS21705 at 4540.239 kb on - strand, within BWI76_RS21705 at 4540.404 kb on - strand, within BWI76_RS21705
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,537,623 + BWI76_RS21695 0.67 -0.8 4,537,771 - BWI76_RS21695 0.82 -0.3 4,537,776 + BWI76_RS21695 0.83 +0.7 4,537,789 + BWI76_RS21695 0.84 -0.4 4,537,877 - +0.5 4,537,879 - +0.1 4,537,879 - -0.7 4,537,884 - +0.3 4,537,899 - -0.7 4,537,917 + -0.2 4,537,984 + -0.7 4,537,992 - -0.7 4,538,052 + -0.6 4,538,062 + -0.5 4,538,070 - -0.1 4,538,070 - -0.5 4,538,096 + +0.5 4,538,127 + -0.8 4,538,151 + -1.3 4,538,164 - +0.0 4,538,217 + +2.7 4,538,328 - -0.1 4,538,395 + -0.0 4,538,395 + -0.2 4,538,403 + -0.5 4,538,403 - +0.1 4,538,409 + -0.2 4,538,417 - +0.1 4,538,417 - -0.8 4,538,424 + -1.7 4,538,426 - -0.1 4,538,432 - -0.1 4,538,432 - +0.4 4,538,432 - -0.1 4,538,432 - -0.0 4,538,611 + +0.6 4,538,652 - +0.9 4,538,662 - -0.9 4,538,667 - -0.2 4,538,703 + BWI76_RS21700 0.11 -0.3 4,538,710 + BWI76_RS21700 0.12 +0.6 4,538,715 + BWI76_RS21700 0.13 +0.4 4,538,718 + BWI76_RS21700 0.13 -1.1 4,538,723 - BWI76_RS21700 0.14 -1.5 4,538,820 + BWI76_RS21700 0.26 +0.3 4,538,849 - BWI76_RS21700 0.30 -0.0 4,538,857 - BWI76_RS21700 0.31 +0.1 4,538,895 - BWI76_RS21700 0.35 -0.4 4,539,045 + BWI76_RS21700 0.54 -0.3 4,539,168 + BWI76_RS21700 0.70 +6.1 4,539,250 - BWI76_RS21700 0.80 +0.2 4,539,369 - -1.0 4,539,369 - +0.5 4,539,374 + +1.0 4,539,510 + -0.0 4,539,626 + BWI76_RS21705 0.11 +0.1 4,539,636 - BWI76_RS21705 0.12 -1.7 4,539,682 + BWI76_RS21705 0.16 -0.2 4,539,725 - BWI76_RS21705 0.19 -0.8 4,539,725 - BWI76_RS21705 0.19 +0.6 4,539,775 + BWI76_RS21705 0.24 +1.3 4,539,788 + BWI76_RS21705 0.25 +1.7 4,539,834 + BWI76_RS21705 0.28 -0.2 4,539,842 - BWI76_RS21705 0.29 -0.0 4,539,853 + BWI76_RS21705 0.30 -0.3 4,539,943 + BWI76_RS21705 0.38 +0.1 4,539,979 - BWI76_RS21705 0.41 -0.3 4,540,116 + BWI76_RS21705 0.52 -0.7 4,540,139 + BWI76_RS21705 0.54 +0.6 4,540,212 - BWI76_RS21705 0.60 -0.7 4,540,239 - BWI76_RS21705 0.62 +0.2 4,540,404 - BWI76_RS21705 0.76 -0.3
Or see this region's nucleotide sequence