Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15860

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15840 and BWI76_RS15845 overlap by 17 nucleotidesBWI76_RS15845 and BWI76_RS15850 overlap by 4 nucleotidesBWI76_RS15850 and BWI76_RS15855 overlap by 4 nucleotidesBWI76_RS15855 and BWI76_RS15860 overlap by 4 nucleotidesBWI76_RS15860 and BWI76_RS15865 overlap by 4 nucleotidesBWI76_RS15865 and BWI76_RS15870 overlap by 4 nucleotides BWI76_RS15840: BWI76_RS15840 - prophage protein, at 3,292,023 to 3,292,805 _RS15840 BWI76_RS15845: BWI76_RS15845 - hypothetical protein, at 3,292,789 to 3,293,079 _RS15845 BWI76_RS15850: BWI76_RS15850 - DUF1317 domain-containing protein, at 3,293,076 to 3,293,234 _RS15850 BWI76_RS15855: BWI76_RS15855 - hypothetical protein, at 3,293,231 to 3,293,458 _RS15855 BWI76_RS15860: BWI76_RS15860 - adenine-specific DNA methyltransferase, at 3,293,455 to 3,294,114 _RS15860 BWI76_RS15865: BWI76_RS15865 - hypothetical protein, at 3,294,111 to 3,294,332 _RS15865 BWI76_RS15870: BWI76_RS15870 - hypothetical protein, at 3,294,329 to 3,295,048 _RS15870 Position (kb) 3293 3294 3295Strain fitness (log2 ratio) -9 -8 -7 -6 -5 -4 -3 -2 -1 0 1at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.520 kb on + strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.528 kb on - strand, within BWI76_RS15840at 3292.674 kb on - strand, within BWI76_RS15840at 3292.787 kb on - strandat 3293.003 kb on - strand, within BWI76_RS15845at 3293.200 kb on - strand, within BWI76_RS15850at 3293.215 kb on + strand, within BWI76_RS15850at 3293.538 kb on + strand, within BWI76_RS15860at 3293.610 kb on + strand, within BWI76_RS15860at 3293.677 kb on - strand, within BWI76_RS15860at 3293.694 kb on - strand, within BWI76_RS15860at 3293.736 kb on + strand, within BWI76_RS15860at 3293.814 kb on - strand, within BWI76_RS15860at 3293.968 kb on - strand, within BWI76_RS15860at 3294.160 kb on + strand, within BWI76_RS15865at 3294.202 kb on - strand, within BWI76_RS15865at 3294.202 kb on - strand, within BWI76_RS15865at 3294.223 kb on + strand, within BWI76_RS15865at 3295.027 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,292,520 + BWI76_RS15840 0.63 -5.1
3,292,520 + BWI76_RS15840 0.63 -7.3
3,292,520 + BWI76_RS15840 0.63 -3.2
3,292,528 - BWI76_RS15840 0.64 +0.6
3,292,528 - BWI76_RS15840 0.64 +1.2
3,292,674 - BWI76_RS15840 0.83 +0.1
3,292,787 - +0.1
3,293,003 - BWI76_RS15845 0.74 -0.6
3,293,200 - BWI76_RS15850 0.78 +0.3
3,293,215 + BWI76_RS15850 0.87 -9.5
3,293,538 + BWI76_RS15860 0.13 -2.9
3,293,610 + BWI76_RS15860 0.23 -4.5
3,293,677 - BWI76_RS15860 0.34 -1.4
3,293,694 - BWI76_RS15860 0.36 +0.6
3,293,736 + BWI76_RS15860 0.43 -7.3
3,293,814 - BWI76_RS15860 0.54 -0.3
3,293,968 - BWI76_RS15860 0.78 -0.3
3,294,160 + BWI76_RS15865 0.22 -0.7
3,294,202 - BWI76_RS15865 0.41 -0.4
3,294,202 - BWI76_RS15865 0.41 -1.3
3,294,223 + BWI76_RS15865 0.50 +1.6
3,295,027 + -1.1

Or see this region's nucleotide sequence