Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15280

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15275 and BWI76_RS15280 are separated by 204 nucleotidesBWI76_RS15280 and BWI76_RS15285 are separated by 73 nucleotides BWI76_RS15275: BWI76_RS15275 - isomerase, at 3,201,038 to 3,201,829 _RS15275 BWI76_RS15280: BWI76_RS15280 - sugar transporter, at 3,202,034 to 3,203,233 _RS15280 BWI76_RS15285: BWI76_RS15285 - stress protection protein MarC, at 3,203,307 to 3,203,975 _RS15285 Position (kb) 3202 3203 3204Strain fitness (log2 ratio) -1 0 1 2 3at 3201.277 kb on - strand, within BWI76_RS15275at 3201.401 kb on - strand, within BWI76_RS15275at 3201.406 kb on - strand, within BWI76_RS15275at 3201.664 kb on + strand, within BWI76_RS15275at 3201.839 kb on - strandat 3201.924 kb on + strandat 3202.023 kb on + strandat 3202.138 kb on + strandat 3202.233 kb on + strand, within BWI76_RS15280at 3202.605 kb on - strand, within BWI76_RS15280at 3202.883 kb on + strand, within BWI76_RS15280at 3203.038 kb on + strand, within BWI76_RS15280at 3203.159 kb on + strandat 3203.446 kb on - strand, within BWI76_RS15285at 3203.473 kb on - strand, within BWI76_RS15285at 3203.478 kb on - strand, within BWI76_RS15285at 3203.863 kb on + strand, within BWI76_RS15285at 3203.942 kb on + strandat 3203.950 kb on - strandat 3204.060 kb on - strandat 3204.104 kb on + strandat 3204.104 kb on + strandat 3204.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,201,277 - BWI76_RS15275 0.30 +0.9
3,201,401 - BWI76_RS15275 0.46 +0.4
3,201,406 - BWI76_RS15275 0.46 -1.6
3,201,664 + BWI76_RS15275 0.79 +0.0
3,201,839 - -0.2
3,201,924 + -1.2
3,202,023 + +0.8
3,202,138 + -0.5
3,202,233 + BWI76_RS15280 0.17 +0.4
3,202,605 - BWI76_RS15280 0.48 +3.2
3,202,883 + BWI76_RS15280 0.71 -0.5
3,203,038 + BWI76_RS15280 0.84 +1.5
3,203,159 + +0.2
3,203,446 - BWI76_RS15285 0.21 +0.3
3,203,473 - BWI76_RS15285 0.25 -0.6
3,203,478 - BWI76_RS15285 0.26 +0.5
3,203,863 + BWI76_RS15285 0.83 +0.0
3,203,942 + -0.5
3,203,950 - -0.3
3,204,060 - +0.2
3,204,104 + -0.3
3,204,104 + -0.9
3,204,122 - +1.3

Or see this region's nucleotide sequence