Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13390

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13375 and BWI76_RS13380 are separated by 11 nucleotidesBWI76_RS13380 and BWI76_RS13385 are separated by 168 nucleotidesBWI76_RS13385 and BWI76_RS13390 overlap by 1 nucleotidesBWI76_RS13390 and BWI76_RS13395 overlap by 1 nucleotides BWI76_RS13375: BWI76_RS13375 - protease, at 2,789,088 to 2,791,052 _RS13375 BWI76_RS13380: BWI76_RS13380 - hypothetical protein, at 2,791,064 to 2,791,297 _RS13380 BWI76_RS13385: BWI76_RS13385 - DUF2474 domain-containing protein, at 2,791,466 to 2,791,591 _RS13385 BWI76_RS13390: BWI76_RS13390 - ubiquinol oxidase subunit II, at 2,791,591 to 2,792,601 _RS13390 BWI76_RS13395: BWI76_RS13395 - cytochrome D ubiquinol oxidase subunit I, at 2,792,601 to 2,793,998 _RS13395 Position (kb) 2791 2792 2793Strain fitness (log2 ratio) -2 -1 0 1at 2791.123 kb on + strand, within BWI76_RS13380at 2791.232 kb on + strand, within BWI76_RS13380at 2791.348 kb on + strandat 2791.609 kb on + strandat 2791.672 kb on + strandat 2791.692 kb on + strand, within BWI76_RS13390at 2791.692 kb on + strand, within BWI76_RS13390at 2791.700 kb on - strand, within BWI76_RS13390at 2791.742 kb on - strand, within BWI76_RS13390at 2791.948 kb on - strand, within BWI76_RS13390at 2792.004 kb on + strand, within BWI76_RS13390at 2792.458 kb on + strand, within BWI76_RS13390at 2792.540 kb on + strandat 2792.548 kb on - strandat 2792.611 kb on + strandat 2792.726 kb on - strandat 2792.938 kb on - strand, within BWI76_RS13395at 2793.007 kb on - strand, within BWI76_RS13395at 2793.150 kb on - strand, within BWI76_RS13395at 2793.289 kb on + strand, within BWI76_RS13395at 2793.425 kb on - strand, within BWI76_RS13395at 2793.509 kb on - strand, within BWI76_RS13395

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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2,791,123 + BWI76_RS13380 0.25 -2.5
2,791,232 + BWI76_RS13380 0.72 -0.1
2,791,348 + -0.3
2,791,609 + -1.0
2,791,672 + -1.7
2,791,692 + BWI76_RS13390 0.10 -0.8
2,791,692 + BWI76_RS13390 0.10 -0.5
2,791,700 - BWI76_RS13390 0.11 -1.4
2,791,742 - BWI76_RS13390 0.15 -1.9
2,791,948 - BWI76_RS13390 0.35 -0.8
2,792,004 + BWI76_RS13390 0.41 -0.7
2,792,458 + BWI76_RS13390 0.86 -1.3
2,792,540 + -0.9
2,792,548 - -1.4
2,792,611 + -1.0
2,792,726 - -1.7
2,792,938 - BWI76_RS13395 0.24 -1.1
2,793,007 - BWI76_RS13395 0.29 +0.9
2,793,150 - BWI76_RS13395 0.39 -0.5
2,793,289 + BWI76_RS13395 0.49 -1.1
2,793,425 - BWI76_RS13395 0.59 -0.2
2,793,509 - BWI76_RS13395 0.65 -0.6

Or see this region's nucleotide sequence