Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13375 and BWI76_RS13380 are separated by 11 nucleotides BWI76_RS13380 and BWI76_RS13385 are separated by 168 nucleotides BWI76_RS13385 and BWI76_RS13390 overlap by 1 nucleotides BWI76_RS13390 and BWI76_RS13395 overlap by 1 nucleotides
BWI76_RS13375: BWI76_RS13375 - protease, at 2,789,088 to 2,791,052
_RS13375
BWI76_RS13380: BWI76_RS13380 - hypothetical protein, at 2,791,064 to 2,791,297
_RS13380
BWI76_RS13385: BWI76_RS13385 - DUF2474 domain-containing protein, at 2,791,466 to 2,791,591
_RS13385
BWI76_RS13390: BWI76_RS13390 - ubiquinol oxidase subunit II, at 2,791,591 to 2,792,601
_RS13390
BWI76_RS13395: BWI76_RS13395 - cytochrome D ubiquinol oxidase subunit I, at 2,792,601 to 2,793,998
_RS13395
Position (kb)
2791
2792
2793 Strain fitness (log2 ratio)
-2
-1
0
1 at 2791.123 kb on + strand, within BWI76_RS13380 at 2791.232 kb on + strand, within BWI76_RS13380 at 2791.348 kb on + strand at 2791.609 kb on + strand at 2791.672 kb on + strand at 2791.692 kb on + strand, within BWI76_RS13390 at 2791.692 kb on + strand, within BWI76_RS13390 at 2791.700 kb on - strand, within BWI76_RS13390 at 2791.742 kb on - strand, within BWI76_RS13390 at 2791.948 kb on - strand, within BWI76_RS13390 at 2792.004 kb on + strand, within BWI76_RS13390 at 2792.458 kb on + strand, within BWI76_RS13390 at 2792.540 kb on + strand at 2792.548 kb on - strand at 2792.611 kb on + strand at 2792.726 kb on - strand at 2792.938 kb on - strand, within BWI76_RS13395 at 2793.007 kb on - strand, within BWI76_RS13395 at 2793.150 kb on - strand, within BWI76_RS13395 at 2793.289 kb on + strand, within BWI76_RS13395 at 2793.425 kb on - strand, within BWI76_RS13395 at 2793.509 kb on - strand, within BWI76_RS13395
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 2,791,123 + BWI76_RS13380 0.25 -2.5 2,791,232 + BWI76_RS13380 0.72 -0.1 2,791,348 + -0.3 2,791,609 + -1.0 2,791,672 + -1.7 2,791,692 + BWI76_RS13390 0.10 -0.8 2,791,692 + BWI76_RS13390 0.10 -0.5 2,791,700 - BWI76_RS13390 0.11 -1.4 2,791,742 - BWI76_RS13390 0.15 -1.9 2,791,948 - BWI76_RS13390 0.35 -0.8 2,792,004 + BWI76_RS13390 0.41 -0.7 2,792,458 + BWI76_RS13390 0.86 -1.3 2,792,540 + -0.9 2,792,548 - -1.4 2,792,611 + -1.0 2,792,726 - -1.7 2,792,938 - BWI76_RS13395 0.24 -1.1 2,793,007 - BWI76_RS13395 0.29 +0.9 2,793,150 - BWI76_RS13395 0.39 -0.5 2,793,289 + BWI76_RS13395 0.49 -1.1 2,793,425 - BWI76_RS13395 0.59 -0.2 2,793,509 - BWI76_RS13395 0.65 -0.6
Or see this region's nucleotide sequence