Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07300

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07295 and BWI76_RS07300 overlap by 4 nucleotidesBWI76_RS07300 and BWI76_RS07305 are separated by 146 nucleotides BWI76_RS07295: BWI76_RS07295 - 6-phospho-beta-glucosidase, at 1,535,676 to 1,537,100 _RS07295 BWI76_RS07300: BWI76_RS07300 - antitermination protein BlgG, at 1,537,097 to 1,537,936 _RS07300 BWI76_RS07305: BWI76_RS07305 - sucrose operon repressor, at 1,538,083 to 1,539,087 _RS07305 Position (kb) 1537 1538Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1536.102 kb on - strand, within BWI76_RS07295at 1536.109 kb on + strand, within BWI76_RS07295at 1536.284 kb on + strand, within BWI76_RS07295at 1536.373 kb on - strand, within BWI76_RS07295at 1536.423 kb on - strand, within BWI76_RS07295at 1536.664 kb on - strand, within BWI76_RS07295at 1536.788 kb on + strand, within BWI76_RS07295at 1536.811 kb on - strand, within BWI76_RS07295at 1536.941 kb on + strand, within BWI76_RS07295at 1536.949 kb on - strand, within BWI76_RS07295at 1537.184 kb on + strand, within BWI76_RS07300at 1537.280 kb on - strand, within BWI76_RS07300at 1537.280 kb on - strand, within BWI76_RS07300at 1537.377 kb on + strand, within BWI76_RS07300at 1537.588 kb on + strand, within BWI76_RS07300at 1537.658 kb on + strand, within BWI76_RS07300at 1537.665 kb on + strand, within BWI76_RS07300at 1537.732 kb on + strand, within BWI76_RS07300at 1537.863 kb on + strandat 1537.899 kb on + strandat 1537.949 kb on - strandat 1538.138 kb on - strandat 1538.412 kb on - strand, within BWI76_RS07305at 1538.461 kb on + strand, within BWI76_RS07305at 1538.597 kb on + strand, within BWI76_RS07305at 1538.667 kb on + strand, within BWI76_RS07305at 1538.667 kb on + strand, within BWI76_RS07305at 1538.801 kb on - strand, within BWI76_RS07305at 1538.907 kb on + strand, within BWI76_RS07305

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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1,536,102 - BWI76_RS07295 0.30 +0.1
1,536,109 + BWI76_RS07295 0.30 -0.5
1,536,284 + BWI76_RS07295 0.43 +0.9
1,536,373 - BWI76_RS07295 0.49 -0.0
1,536,423 - BWI76_RS07295 0.52 +0.9
1,536,664 - BWI76_RS07295 0.69 -0.0
1,536,788 + BWI76_RS07295 0.78 -0.6
1,536,811 - BWI76_RS07295 0.80 -0.1
1,536,941 + BWI76_RS07295 0.89 -0.9
1,536,949 - BWI76_RS07295 0.89 -0.1
1,537,184 + BWI76_RS07300 0.10 -0.1
1,537,280 - BWI76_RS07300 0.22 -0.6
1,537,280 - BWI76_RS07300 0.22 +3.9
1,537,377 + BWI76_RS07300 0.33 -0.1
1,537,588 + BWI76_RS07300 0.58 -0.5
1,537,658 + BWI76_RS07300 0.67 -0.0
1,537,665 + BWI76_RS07300 0.68 +1.3
1,537,732 + BWI76_RS07300 0.76 +0.1
1,537,863 + +0.3
1,537,899 + -0.7
1,537,949 - -1.4
1,538,138 - -1.3
1,538,412 - BWI76_RS07305 0.33 -2.2
1,538,461 + BWI76_RS07305 0.38 -0.1
1,538,597 + BWI76_RS07305 0.51 -0.4
1,538,667 + BWI76_RS07305 0.58 -2.3
1,538,667 + BWI76_RS07305 0.58 -0.0
1,538,801 - BWI76_RS07305 0.71 -0.6
1,538,907 + BWI76_RS07305 0.82 -1.5

Or see this region's nucleotide sequence