Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07235 and BWI76_RS07240 are separated by 24 nucleotides BWI76_RS07240 and BWI76_RS07245 are separated by 10 nucleotides
BWI76_RS07235: BWI76_RS07235 - hypothetical protein, at 1,522,501 to 1,523,424
_RS07235
BWI76_RS07240: BWI76_RS07240 - D-ribose transporter ATP-binding protein, at 1,523,449 to 1,524,933
_RS07240
BWI76_RS07245: BWI76_RS07245 - ABC transporter, at 1,524,944 to 1,525,975
_RS07245
Position (kb)
1523
1524
1525 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1522.527 kb on + strand at 1522.539 kb on - strand at 1522.611 kb on - strand, within BWI76_RS07235 at 1522.697 kb on + strand, within BWI76_RS07235 at 1522.896 kb on + strand, within BWI76_RS07235 at 1522.960 kb on - strand, within BWI76_RS07235 at 1523.007 kb on + strand, within BWI76_RS07235 at 1523.124 kb on + strand, within BWI76_RS07235 at 1523.132 kb on - strand at 1523.173 kb on - strand, within BWI76_RS07235 at 1523.285 kb on + strand, within BWI76_RS07235 at 1523.290 kb on + strand, within BWI76_RS07235 at 1523.318 kb on + strand, within BWI76_RS07235 at 1523.498 kb on + strand at 1523.871 kb on - strand, within BWI76_RS07240 at 1523.890 kb on - strand, within BWI76_RS07240 at 1523.954 kb on + strand, within BWI76_RS07240 at 1523.954 kb on + strand, within BWI76_RS07240 at 1523.978 kb on - strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.203 kb on - strand, within BWI76_RS07240 at 1524.209 kb on + strand, within BWI76_RS07240 at 1524.209 kb on + strand, within BWI76_RS07240 at 1524.216 kb on + strand, within BWI76_RS07240 at 1524.217 kb on + strand, within BWI76_RS07240 at 1524.309 kb on + strand, within BWI76_RS07240 at 1524.376 kb on + strand, within BWI76_RS07240 at 1524.376 kb on + strand, within BWI76_RS07240 at 1524.452 kb on - strand, within BWI76_RS07240 at 1524.563 kb on - strand, within BWI76_RS07240 at 1524.565 kb on + strand, within BWI76_RS07240 at 1524.573 kb on - strand, within BWI76_RS07240 at 1524.573 kb on - strand, within BWI76_RS07240 at 1524.573 kb on - strand, within BWI76_RS07240 at 1524.588 kb on - strand, within BWI76_RS07240 at 1524.588 kb on - strand, within BWI76_RS07240 at 1524.588 kb on - strand, within BWI76_RS07240 at 1524.609 kb on - strand, within BWI76_RS07240 at 1524.644 kb on - strand, within BWI76_RS07240 at 1524.725 kb on + strand, within BWI76_RS07240 at 1524.782 kb on - strand, within BWI76_RS07240 at 1524.814 kb on - strand at 1524.843 kb on + strand at 1524.843 kb on + strand at 1524.851 kb on - strand at 1524.932 kb on + strand at 1524.942 kb on - strand at 1524.949 kb on - strand at 1525.018 kb on + strand at 1525.065 kb on + strand, within BWI76_RS07245 at 1525.173 kb on + strand, within BWI76_RS07245 at 1525.175 kb on - strand, within BWI76_RS07245 at 1525.181 kb on - strand, within BWI76_RS07245 at 1525.186 kb on - strand, within BWI76_RS07245 at 1525.208 kb on - strand, within BWI76_RS07245 at 1525.212 kb on + strand, within BWI76_RS07245 at 1525.212 kb on + strand, within BWI76_RS07245 at 1525.212 kb on + strand, within BWI76_RS07245 at 1525.231 kb on - strand, within BWI76_RS07245 at 1525.262 kb on - strand, within BWI76_RS07245 at 1525.273 kb on - strand, within BWI76_RS07245 at 1525.427 kb on - strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.450 kb on + strand, within BWI76_RS07245 at 1525.458 kb on - strand, within BWI76_RS07245 at 1525.458 kb on - strand, within BWI76_RS07245 at 1525.458 kb on - strand at 1525.458 kb on - strand, within BWI76_RS07245 at 1525.458 kb on - strand, within BWI76_RS07245 at 1525.458 kb on - strand, within BWI76_RS07245 at 1525.458 kb on - strand, within BWI76_RS07245 at 1525.499 kb on - strand, within BWI76_RS07245 at 1525.552 kb on + strand, within BWI76_RS07245 at 1525.552 kb on + strand, within BWI76_RS07245 at 1525.735 kb on + strand, within BWI76_RS07245 at 1525.866 kb on - strand, within BWI76_RS07245
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,522,527 + +0.4 1,522,539 - -0.9 1,522,611 - BWI76_RS07235 0.12 +0.8 1,522,697 + BWI76_RS07235 0.21 -1.5 1,522,896 + BWI76_RS07235 0.43 +0.1 1,522,960 - BWI76_RS07235 0.50 +0.5 1,523,007 + BWI76_RS07235 0.55 +0.1 1,523,124 + BWI76_RS07235 0.67 +1.3 1,523,132 - +0.1 1,523,173 - BWI76_RS07235 0.73 -0.4 1,523,285 + BWI76_RS07235 0.85 +4.2 1,523,290 + BWI76_RS07235 0.85 -1.4 1,523,318 + BWI76_RS07235 0.88 +0.5 1,523,498 + -0.1 1,523,871 - BWI76_RS07240 0.28 +0.7 1,523,890 - BWI76_RS07240 0.30 +4.9 1,523,954 + BWI76_RS07240 0.34 -0.1 1,523,954 + BWI76_RS07240 0.34 -0.7 1,523,978 - BWI76_RS07240 0.36 +1.0 1,524,110 + BWI76_RS07240 0.45 -0.1 1,524,110 + BWI76_RS07240 0.45 +0.1 1,524,110 + BWI76_RS07240 0.45 +0.6 1,524,110 + BWI76_RS07240 0.45 +1.7 1,524,118 - BWI76_RS07240 0.45 -1.3 1,524,118 - BWI76_RS07240 0.45 -0.3 1,524,118 - BWI76_RS07240 0.45 +0.1 1,524,118 - BWI76_RS07240 0.45 -0.4 1,524,203 - BWI76_RS07240 0.51 +0.2 1,524,209 + BWI76_RS07240 0.51 -0.7 1,524,209 + BWI76_RS07240 0.51 -0.7 1,524,216 + BWI76_RS07240 0.52 +0.3 1,524,217 + BWI76_RS07240 0.52 -1.1 1,524,309 + BWI76_RS07240 0.58 +1.7 1,524,376 + BWI76_RS07240 0.62 +0.5 1,524,376 + BWI76_RS07240 0.62 +0.3 1,524,452 - BWI76_RS07240 0.68 +0.1 1,524,563 - BWI76_RS07240 0.75 -1.5 1,524,565 + BWI76_RS07240 0.75 -0.2 1,524,573 - BWI76_RS07240 0.76 +2.0 1,524,573 - BWI76_RS07240 0.76 +0.1 1,524,573 - BWI76_RS07240 0.76 +0.8 1,524,588 - BWI76_RS07240 0.77 +1.2 1,524,588 - BWI76_RS07240 0.77 +0.8 1,524,588 - BWI76_RS07240 0.77 +0.2 1,524,609 - BWI76_RS07240 0.78 +1.2 1,524,644 - BWI76_RS07240 0.80 +0.4 1,524,725 + BWI76_RS07240 0.86 -0.6 1,524,782 - BWI76_RS07240 0.90 -0.2 1,524,814 - -0.5 1,524,843 + -0.4 1,524,843 + -0.1 1,524,851 - +0.1 1,524,932 + -0.5 1,524,942 - -2.9 1,524,949 - +0.7 1,525,018 + -0.2 1,525,065 + BWI76_RS07245 0.12 +1.9 1,525,173 + BWI76_RS07245 0.22 -0.7 1,525,175 - BWI76_RS07245 0.22 +0.3 1,525,181 - BWI76_RS07245 0.23 +0.1 1,525,186 - BWI76_RS07245 0.23 -0.3 1,525,208 - BWI76_RS07245 0.26 -0.2 1,525,212 + BWI76_RS07245 0.26 -0.5 1,525,212 + BWI76_RS07245 0.26 -0.5 1,525,212 + BWI76_RS07245 0.26 +0.2 1,525,231 - BWI76_RS07245 0.28 +0.7 1,525,262 - BWI76_RS07245 0.31 -0.7 1,525,273 - BWI76_RS07245 0.32 +0.6 1,525,427 - BWI76_RS07245 0.47 -1.0 1,525,450 + BWI76_RS07245 0.49 +0.6 1,525,450 + BWI76_RS07245 0.49 -0.5 1,525,450 + BWI76_RS07245 0.49 -1.0 1,525,450 + BWI76_RS07245 0.49 -0.1 1,525,450 + BWI76_RS07245 0.49 +1.6 1,525,450 + BWI76_RS07245 0.49 -1.3 1,525,450 + BWI76_RS07245 0.49 -0.3 1,525,450 + BWI76_RS07245 0.49 -0.1 1,525,450 + BWI76_RS07245 0.49 +0.5 1,525,450 + BWI76_RS07245 0.49 -0.5 1,525,458 - BWI76_RS07245 0.50 -0.6 1,525,458 - BWI76_RS07245 0.50 -3.1 1,525,458 - +0.5 1,525,458 - BWI76_RS07245 0.50 +0.5 1,525,458 - BWI76_RS07245 0.50 -0.3 1,525,458 - BWI76_RS07245 0.50 -0.0 1,525,458 - BWI76_RS07245 0.50 -0.7 1,525,499 - BWI76_RS07245 0.54 -0.1 1,525,552 + BWI76_RS07245 0.59 -0.4 1,525,552 + BWI76_RS07245 0.59 -0.1 1,525,735 + BWI76_RS07245 0.77 -0.4 1,525,866 - BWI76_RS07245 0.89 -0.8
Or see this region's nucleotide sequence