Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07230 and BWI76_RS07235 are separated by 450 nucleotides BWI76_RS07235 and BWI76_RS07240 are separated by 24 nucleotides
BWI76_RS07230: BWI76_RS07230 - transcriptional regulator, at 1,521,031 to 1,522,050
_RS07230
BWI76_RS07235: BWI76_RS07235 - hypothetical protein, at 1,522,501 to 1,523,424
_RS07235
BWI76_RS07240: BWI76_RS07240 - D-ribose transporter ATP-binding protein, at 1,523,449 to 1,524,933
_RS07240
Position (kb) 1522
1523
1524 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1521.604 kb on + strand, within BWI76_RS07230 at 1521.782 kb on - strand, within BWI76_RS07230 at 1521.894 kb on + strand, within BWI76_RS07230 at 1522.277 kb on + strand at 1522.527 kb on + strand at 1522.539 kb on - strand at 1522.611 kb on - strand, within BWI76_RS07235 at 1522.697 kb on + strand, within BWI76_RS07235 at 1522.896 kb on + strand, within BWI76_RS07235 at 1522.960 kb on - strand, within BWI76_RS07235 at 1523.007 kb on + strand, within BWI76_RS07235 at 1523.124 kb on + strand, within BWI76_RS07235 at 1523.132 kb on - strand at 1523.173 kb on - strand, within BWI76_RS07235 at 1523.285 kb on + strand, within BWI76_RS07235 at 1523.290 kb on + strand, within BWI76_RS07235 at 1523.318 kb on + strand, within BWI76_RS07235 at 1523.498 kb on + strand at 1523.871 kb on - strand, within BWI76_RS07240 at 1523.890 kb on - strand, within BWI76_RS07240 at 1523.954 kb on + strand, within BWI76_RS07240 at 1523.954 kb on + strand, within BWI76_RS07240 at 1523.978 kb on - strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.110 kb on + strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.118 kb on - strand, within BWI76_RS07240 at 1524.203 kb on - strand, within BWI76_RS07240 at 1524.209 kb on + strand, within BWI76_RS07240 at 1524.209 kb on + strand, within BWI76_RS07240 at 1524.216 kb on + strand, within BWI76_RS07240 at 1524.217 kb on + strand, within BWI76_RS07240 at 1524.309 kb on + strand, within BWI76_RS07240 at 1524.376 kb on + strand, within BWI76_RS07240 at 1524.376 kb on + strand, within BWI76_RS07240
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 1,521,604 + BWI76_RS07230 0.56 -0.0 1,521,782 - BWI76_RS07230 0.74 -1.4 1,521,894 + BWI76_RS07230 0.85 +0.5 1,522,277 + -0.2 1,522,527 + +0.4 1,522,539 - -0.9 1,522,611 - BWI76_RS07235 0.12 +0.8 1,522,697 + BWI76_RS07235 0.21 -1.5 1,522,896 + BWI76_RS07235 0.43 +0.1 1,522,960 - BWI76_RS07235 0.50 +0.5 1,523,007 + BWI76_RS07235 0.55 +0.1 1,523,124 + BWI76_RS07235 0.67 +1.3 1,523,132 - +0.1 1,523,173 - BWI76_RS07235 0.73 -0.4 1,523,285 + BWI76_RS07235 0.85 +4.2 1,523,290 + BWI76_RS07235 0.85 -1.4 1,523,318 + BWI76_RS07235 0.88 +0.5 1,523,498 + -0.1 1,523,871 - BWI76_RS07240 0.28 +0.7 1,523,890 - BWI76_RS07240 0.30 +4.9 1,523,954 + BWI76_RS07240 0.34 -0.1 1,523,954 + BWI76_RS07240 0.34 -0.7 1,523,978 - BWI76_RS07240 0.36 +1.0 1,524,110 + BWI76_RS07240 0.45 -0.1 1,524,110 + BWI76_RS07240 0.45 +0.1 1,524,110 + BWI76_RS07240 0.45 +0.6 1,524,110 + BWI76_RS07240 0.45 +1.7 1,524,118 - BWI76_RS07240 0.45 -1.3 1,524,118 - BWI76_RS07240 0.45 -0.3 1,524,118 - BWI76_RS07240 0.45 +0.1 1,524,118 - BWI76_RS07240 0.45 -0.4 1,524,203 - BWI76_RS07240 0.51 +0.2 1,524,209 + BWI76_RS07240 0.51 -0.7 1,524,209 + BWI76_RS07240 0.51 -0.7 1,524,216 + BWI76_RS07240 0.52 +0.3 1,524,217 + BWI76_RS07240 0.52 -1.1 1,524,309 + BWI76_RS07240 0.58 +1.7 1,524,376 + BWI76_RS07240 0.62 +0.5 1,524,376 + BWI76_RS07240 0.62 +0.3
Or see this region's nucleotide sequence