Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03885 and BWI76_RS03890 are separated by 201 nucleotides BWI76_RS03890 and BWI76_RS03895 are separated by 10 nucleotides BWI76_RS03895 and BWI76_RS03900 are separated by 102 nucleotides
BWI76_RS03885: BWI76_RS03885 - hypothetical protein, at 802,871 to 804,085
_RS03885
BWI76_RS03890: BWI76_RS03890 - hypothetical protein, at 804,287 to 805,726
_RS03890
BWI76_RS03895: BWI76_RS03895 - reactive intermediate/imine deaminase, at 805,737 to 806,129
_RS03895
BWI76_RS03900: BWI76_RS03900 - Na+/proline symporter, at 806,232 to 807,719
_RS03900
Position (kb) 804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.376 kb on - strand, within BWI76_RS03885 at 803.376 kb on - strand, within BWI76_RS03885 at 803.398 kb on + strand, within BWI76_RS03885 at 803.502 kb on + strand, within BWI76_RS03885 at 803.510 kb on - strand, within BWI76_RS03885 at 803.520 kb on - strand, within BWI76_RS03885 at 803.535 kb on - strand, within BWI76_RS03885 at 803.541 kb on - strand, within BWI76_RS03885 at 803.804 kb on + strand, within BWI76_RS03885 at 803.824 kb on + strand, within BWI76_RS03885 at 803.940 kb on - strand, within BWI76_RS03885 at 803.940 kb on - strand, within BWI76_RS03885 at 804.467 kb on + strand, within BWI76_RS03890 at 804.483 kb on + strand, within BWI76_RS03890 at 804.605 kb on - strand, within BWI76_RS03890 at 804.683 kb on + strand, within BWI76_RS03890 at 804.875 kb on + strand, within BWI76_RS03890 at 805.095 kb on + strand, within BWI76_RS03890 at 805.123 kb on + strand, within BWI76_RS03890 at 805.162 kb on + strand, within BWI76_RS03890 at 805.184 kb on + strand, within BWI76_RS03890 at 805.413 kb on - strand, within BWI76_RS03890 at 805.629 kb on + strand at 805.629 kb on + strand at 805.637 kb on - strand at 805.645 kb on + strand at 805.653 kb on - strand at 805.663 kb on - strand at 805.736 kb on + strand at 805.770 kb on + strand at 805.788 kb on + strand, within BWI76_RS03895 at 805.809 kb on + strand, within BWI76_RS03895 at 805.874 kb on + strand, within BWI76_RS03895 at 805.905 kb on + strand, within BWI76_RS03895 at 805.913 kb on - strand, within BWI76_RS03895 at 805.938 kb on + strand, within BWI76_RS03895 at 805.938 kb on + strand, within BWI76_RS03895 at 805.952 kb on - strand, within BWI76_RS03895 at 805.954 kb on + strand, within BWI76_RS03895 at 805.957 kb on - strand, within BWI76_RS03895 at 805.959 kb on + strand, within BWI76_RS03895 at 805.969 kb on + strand, within BWI76_RS03895 at 805.993 kb on + strand, within BWI76_RS03895 at 805.993 kb on + strand, within BWI76_RS03895 at 806.001 kb on - strand, within BWI76_RS03895 at 806.001 kb on - strand, within BWI76_RS03895 at 806.014 kb on - strand, within BWI76_RS03895 at 806.014 kb on - strand, within BWI76_RS03895 at 806.015 kb on + strand, within BWI76_RS03895 at 806.039 kb on + strand, within BWI76_RS03895 at 806.044 kb on - strand, within BWI76_RS03895 at 806.046 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.051 kb on + strand, within BWI76_RS03895 at 806.059 kb on - strand, within BWI76_RS03895 at 806.062 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.069 kb on + strand, within BWI76_RS03895 at 806.070 kb on - strand, within BWI76_RS03895 at 806.070 kb on - strand, within BWI76_RS03895 at 806.073 kb on + strand, within BWI76_RS03895 at 806.074 kb on - strand, within BWI76_RS03895 at 806.081 kb on - strand, within BWI76_RS03895 at 806.088 kb on + strand, within BWI76_RS03895 at 806.096 kb on + strand at 806.096 kb on + strand at 806.096 kb on - strand at 806.096 kb on - strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.097 kb on + strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.105 kb on - strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.107 kb on + strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.116 kb on - strand at 806.184 kb on + strand at 806.184 kb on + strand at 806.184 kb on + strand at 806.184 kb on - strand at 806.184 kb on - strand at 806.184 kb on - strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.186 kb on + strand at 806.192 kb on + strand at 806.192 kb on + strand at 806.192 kb on - strand at 806.194 kb on - strand at 806.194 kb on - strand at 806.199 kb on + strand at 806.199 kb on - strand at 806.199 kb on - strand at 806.201 kb on - strand at 806.201 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.207 kb on - strand at 806.209 kb on + strand at 806.230 kb on - strand at 806.257 kb on + strand at 806.265 kb on - strand at 806.276 kb on + strand at 806.284 kb on - strand at 806.285 kb on - strand at 806.287 kb on + strand at 806.289 kb on - strand at 806.290 kb on - strand at 806.290 kb on - strand at 806.293 kb on + strand at 806.293 kb on + strand at 806.293 kb on + strand at 806.295 kb on - strand at 806.296 kb on + strand at 806.296 kb on + strand at 806.296 kb on + strand at 806.300 kb on + strand at 806.300 kb on - strand at 806.300 kb on - strand at 806.300 kb on - strand at 806.301 kb on - strand at 806.301 kb on - strand at 806.304 kb on - strand at 806.304 kb on - strand at 806.309 kb on - strand at 806.343 kb on + strand at 806.372 kb on + strand at 806.372 kb on + strand at 806.373 kb on + strand at 806.375 kb on - strand at 806.377 kb on + strand at 806.380 kb on - strand at 806.382 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.401 kb on - strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.404 kb on + strand, within BWI76_RS03900 at 806.409 kb on + strand, within BWI76_RS03900 at 806.412 kb on - strand, within BWI76_RS03900 at 806.418 kb on + strand, within BWI76_RS03900 at 806.418 kb on + strand, within BWI76_RS03900 at 806.419 kb on + strand, within BWI76_RS03900 at 806.432 kb on - strand, within BWI76_RS03900 at 806.464 kb on - strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.482 kb on + strand, within BWI76_RS03900 at 806.487 kb on + strand, within BWI76_RS03900 at 806.489 kb on + strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.490 kb on - strand, within BWI76_RS03900 at 806.502 kb on - strand, within BWI76_RS03900 at 806.504 kb on + strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.512 kb on - strand, within BWI76_RS03900 at 806.542 kb on + strand, within BWI76_RS03900 at 806.549 kb on + strand, within BWI76_RS03900 at 806.563 kb on - strand, within BWI76_RS03900 at 806.634 kb on - strand, within BWI76_RS03900 at 806.648 kb on - strand, within BWI76_RS03900 at 806.657 kb on + strand, within BWI76_RS03900 at 806.658 kb on + strand, within BWI76_RS03900 at 806.658 kb on + strand, within BWI76_RS03900 at 806.663 kb on + strand, within BWI76_RS03900 at 806.663 kb on + strand, within BWI76_RS03900 at 806.666 kb on - strand, within BWI76_RS03900 at 806.666 kb on - strand, within BWI76_RS03900 at 806.672 kb on - strand, within BWI76_RS03900 at 806.676 kb on + strand, within BWI76_RS03900 at 806.676 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.709 kb on + strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900 at 806.717 kb on - strand, within BWI76_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 803,376 - BWI76_RS03885 0.42 -0.1 803,376 - BWI76_RS03885 0.42 +1.7 803,398 + BWI76_RS03885 0.43 +1.1 803,502 + BWI76_RS03885 0.52 +0.6 803,510 - BWI76_RS03885 0.53 -0.8 803,520 - BWI76_RS03885 0.53 +0.2 803,535 - BWI76_RS03885 0.55 +0.5 803,541 - BWI76_RS03885 0.55 +0.8 803,804 + BWI76_RS03885 0.77 +0.5 803,824 + BWI76_RS03885 0.78 -0.1 803,940 - BWI76_RS03885 0.88 +0.1 803,940 - BWI76_RS03885 0.88 -0.1 804,467 + BWI76_RS03890 0.12 -0.2 804,483 + BWI76_RS03890 0.14 +0.5 804,605 - BWI76_RS03890 0.22 -0.4 804,683 + BWI76_RS03890 0.28 +2.0 804,875 + BWI76_RS03890 0.41 +2.0 805,095 + BWI76_RS03890 0.56 +0.2 805,123 + BWI76_RS03890 0.58 +1.0 805,162 + BWI76_RS03890 0.61 +0.0 805,184 + BWI76_RS03890 0.62 -0.6 805,413 - BWI76_RS03890 0.78 -1.4 805,629 + -0.7 805,629 + -0.9 805,637 - -0.1 805,645 + -0.1 805,653 - -1.1 805,663 - -0.4 805,736 + -0.1 805,770 + +0.0 805,788 + BWI76_RS03895 0.13 +0.6 805,809 + BWI76_RS03895 0.18 -0.3 805,874 + BWI76_RS03895 0.35 +0.0 805,905 + BWI76_RS03895 0.43 -0.3 805,913 - BWI76_RS03895 0.45 -1.1 805,938 + BWI76_RS03895 0.51 +1.1 805,938 + BWI76_RS03895 0.51 -0.4 805,952 - BWI76_RS03895 0.55 +1.0 805,954 + BWI76_RS03895 0.55 +0.6 805,957 - BWI76_RS03895 0.56 +0.1 805,959 + BWI76_RS03895 0.56 +0.6 805,969 + BWI76_RS03895 0.59 +0.2 805,993 + BWI76_RS03895 0.65 +0.6 805,993 + BWI76_RS03895 0.65 -0.4 806,001 - BWI76_RS03895 0.67 +0.6 806,001 - BWI76_RS03895 0.67 -0.5 806,014 - BWI76_RS03895 0.70 +1.0 806,014 - BWI76_RS03895 0.70 -0.3 806,015 + BWI76_RS03895 0.71 -0.2 806,039 + BWI76_RS03895 0.77 +0.0 806,044 - BWI76_RS03895 0.78 +0.8 806,046 + BWI76_RS03895 0.79 -0.2 806,051 + BWI76_RS03895 0.80 -0.2 806,051 + BWI76_RS03895 0.80 -0.1 806,051 + BWI76_RS03895 0.80 -0.7 806,059 - BWI76_RS03895 0.82 +0.5 806,062 + BWI76_RS03895 0.83 -0.5 806,069 + BWI76_RS03895 0.84 +1.8 806,069 + BWI76_RS03895 0.84 -0.6 806,069 + BWI76_RS03895 0.84 -0.7 806,069 + BWI76_RS03895 0.84 +0.5 806,070 - BWI76_RS03895 0.85 -0.2 806,070 - BWI76_RS03895 0.85 -0.1 806,073 + BWI76_RS03895 0.85 -0.3 806,074 - BWI76_RS03895 0.86 -0.4 806,081 - BWI76_RS03895 0.88 -0.9 806,088 + BWI76_RS03895 0.89 +0.2 806,096 + -0.5 806,096 + +1.2 806,096 - +0.1 806,096 - -0.1 806,097 + -0.1 806,097 + -0.4 806,097 + -1.1 806,097 + +0.6 806,097 + -0.0 806,097 + -0.6 806,097 + -0.1 806,097 + -0.0 806,097 + +1.5 806,097 + -0.1 806,105 - -1.0 806,105 - -0.9 806,105 - +0.2 806,105 - +0.9 806,105 - +0.1 806,105 - -1.2 806,105 - +1.8 806,105 - +0.5 806,105 - +0.7 806,105 - +0.1 806,105 - -0.1 806,105 - -1.4 806,105 - +0.6 806,105 - -1.5 806,105 - -0.2 806,105 - -0.3 806,105 - -0.6 806,107 + +0.3 806,107 + -0.5 806,107 + +2.1 806,107 + +0.1 806,107 + +0.1 806,107 + +0.2 806,107 + -0.6 806,107 + +0.1 806,107 + -1.9 806,107 + -0.2 806,107 + -0.4 806,107 + +0.5 806,107 + +2.6 806,107 + +0.2 806,107 + +1.6 806,107 + +0.1 806,107 + -1.0 806,115 - +0.0 806,115 - +0.0 806,115 - +0.8 806,115 - -0.3 806,115 - -0.2 806,115 - -1.0 806,115 - -0.1 806,115 - +0.3 806,115 - +0.1 806,115 - -0.1 806,115 - -0.4 806,115 - -0.2 806,115 - -0.3 806,115 - +1.0 806,116 - +1.0 806,116 - +1.0 806,116 - -0.3 806,116 - +0.2 806,184 + +0.3 806,184 + -1.7 806,184 + -0.7 806,184 - +0.8 806,184 - +0.3 806,184 - +0.1 806,186 + -0.3 806,186 + +0.9 806,186 + -0.1 806,186 + +0.4 806,186 + -0.2 806,192 + -0.1 806,192 + -0.9 806,192 - +0.7 806,194 - +0.3 806,194 - +0.1 806,199 + -0.4 806,199 - -0.4 806,199 - -0.4 806,201 - -2.2 806,201 - +0.9 806,207 - -0.1 806,207 - -0.3 806,207 - -1.3 806,207 - -0.5 806,207 - +1.7 806,207 - +0.1 806,209 + -0.3 806,230 - -0.4 806,257 + +0.3 806,265 - +0.3 806,276 + -0.2 806,284 - -0.4 806,285 - +0.2 806,287 + +0.3 806,289 - -2.2 806,290 - +0.5 806,290 - -0.4 806,293 + +0.3 806,293 + -0.1 806,293 + +0.8 806,295 - -0.7 806,296 + +1.1 806,296 + -0.4 806,296 + -0.4 806,300 + -1.3 806,300 - +1.6 806,300 - -0.4 806,300 - -0.1 806,301 - +0.3 806,301 - +0.4 806,304 - -0.4 806,304 - +0.8 806,309 - -0.7 806,343 + +0.5 806,372 + -0.6 806,372 + -0.3 806,373 + -0.3 806,375 - +0.2 806,377 + +0.5 806,380 - -0.0 806,382 - BWI76_RS03900 0.10 +0.0 806,401 - BWI76_RS03900 0.11 -1.2 806,401 - BWI76_RS03900 0.11 -0.2 806,401 - BWI76_RS03900 0.11 -0.1 806,404 + BWI76_RS03900 0.12 -0.8 806,404 + BWI76_RS03900 0.12 -0.5 806,404 + BWI76_RS03900 0.12 -1.3 806,409 + BWI76_RS03900 0.12 -0.0 806,412 - BWI76_RS03900 0.12 +0.1 806,418 + BWI76_RS03900 0.12 -0.8 806,418 + BWI76_RS03900 0.12 +0.3 806,419 + BWI76_RS03900 0.13 +0.7 806,432 - BWI76_RS03900 0.13 +0.0 806,464 - BWI76_RS03900 0.16 +0.7 806,482 + BWI76_RS03900 0.17 -0.4 806,482 + BWI76_RS03900 0.17 +0.1 806,482 + BWI76_RS03900 0.17 +0.5 806,482 + BWI76_RS03900 0.17 +0.3 806,487 + BWI76_RS03900 0.17 -0.3 806,489 + BWI76_RS03900 0.17 -0.5 806,490 - BWI76_RS03900 0.17 +0.6 806,490 - BWI76_RS03900 0.17 +3.4 806,490 - BWI76_RS03900 0.17 -0.2 806,502 - BWI76_RS03900 0.18 -0.1 806,504 + BWI76_RS03900 0.18 +0.1 806,512 - BWI76_RS03900 0.19 +0.4 806,512 - BWI76_RS03900 0.19 -0.9 806,512 - BWI76_RS03900 0.19 +1.2 806,512 - BWI76_RS03900 0.19 -0.5 806,512 - BWI76_RS03900 0.19 +2.1 806,542 + BWI76_RS03900 0.21 +1.2 806,549 + BWI76_RS03900 0.21 -0.1 806,563 - BWI76_RS03900 0.22 -0.5 806,634 - BWI76_RS03900 0.27 -0.4 806,648 - BWI76_RS03900 0.28 -0.4 806,657 + BWI76_RS03900 0.29 -1.0 806,658 + BWI76_RS03900 0.29 +0.1 806,658 + BWI76_RS03900 0.29 -0.2 806,663 + BWI76_RS03900 0.29 -0.2 806,663 + BWI76_RS03900 0.29 -0.1 806,666 - BWI76_RS03900 0.29 +0.7 806,666 - BWI76_RS03900 0.29 +0.5 806,672 - BWI76_RS03900 0.30 +2.5 806,676 + BWI76_RS03900 0.30 -0.1 806,676 + BWI76_RS03900 0.30 -0.0 806,709 + BWI76_RS03900 0.32 +0.5 806,709 + BWI76_RS03900 0.32 +0.2 806,709 + BWI76_RS03900 0.32 +0.0 806,717 - BWI76_RS03900 0.33 +0.2 806,717 - BWI76_RS03900 0.33 +0.3 806,717 - BWI76_RS03900 0.33 -1.5
Or see this region's nucleotide sequence