Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03795 and BWI76_RS03800 are separated by 45 nucleotides BWI76_RS03800 and BWI76_RS03805 overlap by 1 nucleotides BWI76_RS03805 and BWI76_RS03810 are separated by 349 nucleotides
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
BWI76_RS03800: BWI76_RS03800 - hypothetical protein, at 786,417 to 786,737
_RS03800
BWI76_RS03805: BWI76_RS03805 - porin, at 786,737 to 787,282
_RS03805
BWI76_RS03810: BWI76_RS03810 - GTPase, at 787,632 to 788,588
_RS03810
Position (kb) 786
787
788 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 785.778 kb on + strand, within BWI76_RS03795 at 785.791 kb on - strand, within BWI76_RS03795 at 785.811 kb on - strand, within BWI76_RS03795 at 785.951 kb on + strand, within BWI76_RS03795 at 785.951 kb on + strand, within BWI76_RS03795 at 786.054 kb on - strand, within BWI76_RS03795 at 786.070 kb on + strand, within BWI76_RS03795 at 786.101 kb on + strand, within BWI76_RS03795 at 786.171 kb on + strand, within BWI76_RS03795 at 786.233 kb on + strand, within BWI76_RS03795 at 786.247 kb on + strand at 786.270 kb on - strand at 786.574 kb on + strand, within BWI76_RS03800 at 786.582 kb on - strand, within BWI76_RS03800 at 786.768 kb on - strand at 786.905 kb on + strand, within BWI76_RS03805 at 786.924 kb on + strand, within BWI76_RS03805 at 786.936 kb on + strand, within BWI76_RS03805 at 786.937 kb on - strand, within BWI76_RS03805 at 787.215 kb on + strand, within BWI76_RS03805 at 787.244 kb on + strand at 787.252 kb on - strand at 787.259 kb on - strand at 787.292 kb on - strand at 787.369 kb on - strand at 787.437 kb on - strand at 787.738 kb on - strand, within BWI76_RS03810 at 787.850 kb on + strand, within BWI76_RS03810 at 788.073 kb on - strand, within BWI76_RS03810 at 788.075 kb on - strand, within BWI76_RS03810 at 788.199 kb on + strand, within BWI76_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 785,778 + BWI76_RS03795 0.57 -0.0 785,791 - BWI76_RS03795 0.58 +2.9 785,811 - BWI76_RS03795 0.59 -0.4 785,951 + BWI76_RS03795 0.69 +0.1 785,951 + BWI76_RS03795 0.69 -0.1 786,054 - BWI76_RS03795 0.77 -0.4 786,070 + BWI76_RS03795 0.78 -0.2 786,101 + BWI76_RS03795 0.80 +0.2 786,171 + BWI76_RS03795 0.85 -0.4 786,233 + BWI76_RS03795 0.90 -0.0 786,247 + +1.0 786,270 - +0.2 786,574 + BWI76_RS03800 0.49 +0.1 786,582 - BWI76_RS03800 0.51 -0.1 786,768 - -0.6 786,905 + BWI76_RS03805 0.31 +0.4 786,924 + BWI76_RS03805 0.34 -0.7 786,936 + BWI76_RS03805 0.36 -0.1 786,937 - BWI76_RS03805 0.37 +4.0 787,215 + BWI76_RS03805 0.88 -1.0 787,244 + +0.2 787,252 - +0.1 787,259 - -1.3 787,292 - +0.2 787,369 - +0.2 787,437 - -0.4 787,738 - BWI76_RS03810 0.11 -0.4 787,850 + BWI76_RS03810 0.23 +0.4 788,073 - BWI76_RS03810 0.46 +0.1 788,075 - BWI76_RS03810 0.46 +0.1 788,199 + BWI76_RS03810 0.59 -0.3
Or see this region's nucleotide sequence