Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides BWI76_RS03795 and BWI76_RS03800 are separated by 45 nucleotides BWI76_RS03800 and BWI76_RS03805 overlap by 1 nucleotides
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
BWI76_RS03800: BWI76_RS03800 - hypothetical protein, at 786,417 to 786,737
_RS03800
BWI76_RS03805: BWI76_RS03805 - porin, at 786,737 to 787,282
_RS03805
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795 at 785.326 kb on + strand, within BWI76_RS03795 at 785.357 kb on - strand, within BWI76_RS03795 at 785.468 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.618 kb on - strand, within BWI76_RS03795 at 785.664 kb on - strand, within BWI76_RS03795 at 785.720 kb on - strand, within BWI76_RS03795 at 785.778 kb on + strand, within BWI76_RS03795 at 785.791 kb on - strand, within BWI76_RS03795 at 785.811 kb on - strand, within BWI76_RS03795 at 785.951 kb on + strand, within BWI76_RS03795 at 785.951 kb on + strand, within BWI76_RS03795 at 786.054 kb on - strand, within BWI76_RS03795 at 786.070 kb on + strand, within BWI76_RS03795 at 786.101 kb on + strand, within BWI76_RS03795 at 786.171 kb on + strand, within BWI76_RS03795 at 786.233 kb on + strand, within BWI76_RS03795 at 786.247 kb on + strand at 786.270 kb on - strand at 786.574 kb on + strand, within BWI76_RS03800 at 786.582 kb on - strand, within BWI76_RS03800 at 786.768 kb on - strand at 786.905 kb on + strand, within BWI76_RS03805 at 786.924 kb on + strand, within BWI76_RS03805 at 786.936 kb on + strand, within BWI76_RS03805 at 786.937 kb on - strand, within BWI76_RS03805 at 787.215 kb on + strand, within BWI76_RS03805 at 787.244 kb on + strand at 787.252 kb on - strand at 787.259 kb on - strand at 787.292 kb on - strand at 787.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 784,028 + BWI76_RS03785 0.69 +0.7 784,050 + BWI76_RS03785 0.71 -1.9 784,050 + BWI76_RS03785 0.71 +0.1 784,057 + BWI76_RS03785 0.72 +0.1 784,058 - BWI76_RS03785 0.72 +0.6 784,065 - BWI76_RS03785 0.73 -0.3 784,119 - BWI76_RS03785 0.80 +0.2 784,119 - BWI76_RS03785 0.80 -0.3 784,119 - BWI76_RS03785 0.80 +0.3 784,119 - BWI76_RS03785 0.80 -0.3 784,119 - BWI76_RS03785 0.80 +0.8 784,212 - -0.9 784,301 - +0.0 784,301 - +0.1 784,334 - +0.3 784,427 - BWI76_RS03790 0.13 -0.1 784,457 + BWI76_RS03790 0.20 +0.5 784,504 + BWI76_RS03790 0.30 +0.4 784,512 - BWI76_RS03790 0.32 -1.3 784,692 + BWI76_RS03790 0.71 -0.2 784,725 + BWI76_RS03790 0.79 -1.0 784,939 + -0.0 784,959 + -0.1 784,997 + +4.5 785,090 - -0.2 785,151 + BWI76_RS03795 0.11 +0.8 785,159 - BWI76_RS03795 0.12 +1.1 785,326 + BWI76_RS03795 0.24 -0.4 785,357 - BWI76_RS03795 0.26 +0.3 785,468 + BWI76_RS03795 0.34 +0.2 785,610 + BWI76_RS03795 0.44 +0.1 785,610 + BWI76_RS03795 0.44 -0.0 785,618 - BWI76_RS03795 0.45 +4.0 785,664 - BWI76_RS03795 0.48 -0.9 785,720 - BWI76_RS03795 0.52 +0.8 785,778 + BWI76_RS03795 0.57 -0.0 785,791 - BWI76_RS03795 0.58 +2.9 785,811 - BWI76_RS03795 0.59 -0.4 785,951 + BWI76_RS03795 0.69 +0.1 785,951 + BWI76_RS03795 0.69 -0.1 786,054 - BWI76_RS03795 0.77 -0.4 786,070 + BWI76_RS03795 0.78 -0.2 786,101 + BWI76_RS03795 0.80 +0.2 786,171 + BWI76_RS03795 0.85 -0.4 786,233 + BWI76_RS03795 0.90 -0.0 786,247 + +1.0 786,270 - +0.2 786,574 + BWI76_RS03800 0.49 +0.1 786,582 - BWI76_RS03800 0.51 -0.1 786,768 - -0.6 786,905 + BWI76_RS03805 0.31 +0.4 786,924 + BWI76_RS03805 0.34 -0.7 786,936 + BWI76_RS03805 0.36 -0.1 786,937 - BWI76_RS03805 0.37 +4.0 787,215 + BWI76_RS03805 0.88 -1.0 787,244 + +0.2 787,252 - +0.1 787,259 - -1.3 787,292 - +0.2 787,369 - +0.2
Or see this region's nucleotide sequence