Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02835 and BWI76_RS02840 are separated by 202 nucleotides BWI76_RS02840 and BWI76_RS02845 are separated by 620 nucleotides
BWI76_RS02835: BWI76_RS02835 - iron-containing alcohol dehydrogenase, at 579,704 to 580,846
_RS02835
BWI76_RS02840: BWI76_RS02840 - methylmalonate-semialdehyde dehydrogenase (CoA acylating), at 581,049 to 582,560
_RS02840
BWI76_RS02845: BWI76_RS02845 - hypothetical protein, at 583,181 to 583,732
_RS02845
Position (kb) 581
582
583 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 580.063 kb on + strand, within BWI76_RS02835 at 580.064 kb on + strand, within BWI76_RS02835 at 580.076 kb on - strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.080 kb on + strand, within BWI76_RS02835 at 580.088 kb on - strand, within BWI76_RS02835 at 580.095 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.105 kb on + strand, within BWI76_RS02835 at 580.113 kb on - strand, within BWI76_RS02835 at 580.113 kb on - strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.118 kb on + strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.126 kb on - strand, within BWI76_RS02835 at 580.144 kb on + strand, within BWI76_RS02835 at 580.149 kb on + strand, within BWI76_RS02835 at 580.175 kb on + strand, within BWI76_RS02835 at 580.183 kb on - strand, within BWI76_RS02835 at 580.186 kb on + strand, within BWI76_RS02835 at 580.220 kb on + strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.252 kb on - strand, within BWI76_RS02835 at 580.254 kb on + strand, within BWI76_RS02835 at 580.262 kb on - strand, within BWI76_RS02835 at 580.267 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.268 kb on + strand, within BWI76_RS02835 at 580.275 kb on - strand, within BWI76_RS02835 at 580.277 kb on + strand, within BWI76_RS02835 at 580.277 kb on + strand, within BWI76_RS02835 at 580.359 kb on + strand, within BWI76_RS02835 at 580.414 kb on + strand, within BWI76_RS02835 at 580.441 kb on - strand, within BWI76_RS02835 at 580.477 kb on + strand, within BWI76_RS02835 at 580.558 kb on + strand, within BWI76_RS02835 at 580.565 kb on + strand, within BWI76_RS02835 at 580.566 kb on - strand, within BWI76_RS02835 at 580.566 kb on - strand, within BWI76_RS02835 at 580.566 kb on - strand at 580.566 kb on - strand, within BWI76_RS02835 at 580.579 kb on + strand at 580.584 kb on + strand, within BWI76_RS02835 at 580.584 kb on + strand, within BWI76_RS02835 at 580.587 kb on - strand, within BWI76_RS02835 at 580.592 kb on - strand, within BWI76_RS02835 at 580.593 kb on + strand, within BWI76_RS02835 at 580.601 kb on + strand, within BWI76_RS02835 at 580.601 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.602 kb on - strand, within BWI76_RS02835 at 580.612 kb on + strand at 580.612 kb on + strand, within BWI76_RS02835 at 580.612 kb on + strand, within BWI76_RS02835 at 580.612 kb on + strand, within BWI76_RS02835 at 580.613 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.620 kb on - strand, within BWI76_RS02835 at 580.632 kb on + strand, within BWI76_RS02835 at 580.632 kb on + strand, within BWI76_RS02835 at 580.640 kb on - strand, within BWI76_RS02835 at 580.653 kb on - strand, within BWI76_RS02835 at 580.658 kb on - strand, within BWI76_RS02835 at 580.658 kb on - strand, within BWI76_RS02835 at 580.707 kb on + strand, within BWI76_RS02835 at 580.707 kb on + strand, within BWI76_RS02835 at 580.715 kb on - strand, within BWI76_RS02835 at 580.715 kb on - strand, within BWI76_RS02835 at 580.740 kb on - strand at 580.779 kb on + strand at 580.779 kb on + strand at 580.785 kb on - strand at 580.785 kb on - strand at 580.787 kb on - strand at 580.787 kb on - strand at 580.787 kb on - strand at 580.789 kb on + strand at 580.818 kb on - strand at 580.818 kb on - strand at 580.825 kb on + strand at 580.830 kb on + strand at 580.833 kb on - strand at 580.833 kb on - strand at 580.835 kb on + strand at 580.835 kb on + strand at 580.835 kb on + strand at 580.836 kb on + strand at 580.836 kb on + strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.843 kb on - strand at 580.849 kb on - strand at 580.904 kb on + strand at 580.968 kb on - strand at 581.015 kb on - strand at 581.060 kb on + strand at 581.061 kb on + strand at 581.062 kb on + strand at 581.062 kb on + strand at 581.070 kb on - strand at 581.075 kb on - strand at 581.094 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.099 kb on + strand at 581.102 kb on - strand at 581.104 kb on + strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.107 kb on - strand at 581.109 kb on + strand at 581.117 kb on - strand at 581.132 kb on - strand at 581.134 kb on + strand at 581.136 kb on + strand at 581.142 kb on - strand at 581.142 kb on - strand at 581.152 kb on + strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.159 kb on - strand at 581.164 kb on - strand at 581.164 kb on - strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.166 kb on + strand at 581.169 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.174 kb on - strand at 581.179 kb on + strand at 581.187 kb on - strand at 581.197 kb on - strand at 581.197 kb on - strand at 581.215 kb on - strand, within BWI76_RS02840 at 581.306 kb on + strand, within BWI76_RS02840 at 581.309 kb on + strand, within BWI76_RS02840 at 581.365 kb on + strand, within BWI76_RS02840 at 581.375 kb on + strand, within BWI76_RS02840 at 581.375 kb on + strand, within BWI76_RS02840 at 581.380 kb on + strand, within BWI76_RS02840 at 581.380 kb on + strand, within BWI76_RS02840 at 581.382 kb on + strand, within BWI76_RS02840 at 581.382 kb on + strand, within BWI76_RS02840 at 581.383 kb on - strand, within BWI76_RS02840 at 581.388 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.390 kb on - strand, within BWI76_RS02840 at 581.429 kb on - strand, within BWI76_RS02840 at 581.452 kb on - strand, within BWI76_RS02840 at 581.461 kb on - strand, within BWI76_RS02840 at 581.506 kb on + strand, within BWI76_RS02840 at 581.509 kb on - strand, within BWI76_RS02840 at 581.514 kb on - strand, within BWI76_RS02840 at 581.525 kb on + strand, within BWI76_RS02840 at 581.533 kb on - strand, within BWI76_RS02840 at 581.555 kb on - strand, within BWI76_RS02840 at 581.562 kb on + strand, within BWI76_RS02840 at 581.570 kb on - strand, within BWI76_RS02840 at 581.588 kb on - strand, within BWI76_RS02840 at 581.699 kb on + strand, within BWI76_RS02840 at 581.709 kb on + strand, within BWI76_RS02840 at 581.709 kb on - strand, within BWI76_RS02840 at 581.775 kb on + strand, within BWI76_RS02840 at 581.847 kb on - strand, within BWI76_RS02840 at 581.883 kb on + strand, within BWI76_RS02840 at 581.948 kb on - strand, within BWI76_RS02840 at 581.971 kb on + strand, within BWI76_RS02840 at 582.007 kb on - strand, within BWI76_RS02840 at 582.014 kb on - strand, within BWI76_RS02840 at 582.022 kb on - strand, within BWI76_RS02840 at 582.022 kb on - strand, within BWI76_RS02840 at 582.142 kb on + strand, within BWI76_RS02840 at 582.167 kb on - strand, within BWI76_RS02840 at 582.216 kb on + strand, within BWI76_RS02840 at 582.382 kb on - strand, within BWI76_RS02840 at 582.402 kb on - strand, within BWI76_RS02840 at 582.433 kb on - strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.436 kb on + strand at 582.455 kb on - strand at 582.455 kb on - strand at 582.475 kb on + strand at 582.484 kb on - strand at 582.487 kb on + strand at 582.524 kb on - strand at 582.548 kb on + strand at 582.573 kb on + strand at 582.608 kb on + strand at 582.616 kb on + strand at 582.676 kb on + strand at 582.731 kb on - strand at 582.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 580,063 + BWI76_RS02835 0.31 +6.9 580,064 + BWI76_RS02835 0.31 +0.2 580,076 - BWI76_RS02835 0.33 -0.8 580,080 + BWI76_RS02835 0.33 -0.4 580,080 + BWI76_RS02835 0.33 +1.4 580,080 + BWI76_RS02835 0.33 +0.3 580,080 + BWI76_RS02835 0.33 +0.5 580,088 - BWI76_RS02835 0.34 -0.8 580,095 + BWI76_RS02835 0.34 -0.1 580,105 + BWI76_RS02835 0.35 -0.6 580,105 + BWI76_RS02835 0.35 -0.6 580,105 + BWI76_RS02835 0.35 -0.6 580,105 + BWI76_RS02835 0.35 -1.1 580,113 - BWI76_RS02835 0.36 -0.2 580,113 - BWI76_RS02835 0.36 -1.1 580,118 + BWI76_RS02835 0.36 +0.1 580,118 + BWI76_RS02835 0.36 -1.3 580,118 + BWI76_RS02835 0.36 +0.1 580,118 + BWI76_RS02835 0.36 -0.3 580,126 - BWI76_RS02835 0.37 +0.0 580,126 - BWI76_RS02835 0.37 +0.2 580,126 - BWI76_RS02835 0.37 -0.4 580,126 - BWI76_RS02835 0.37 +0.3 580,144 + BWI76_RS02835 0.38 -0.5 580,149 + BWI76_RS02835 0.39 +0.3 580,175 + BWI76_RS02835 0.41 -0.3 580,183 - BWI76_RS02835 0.42 +0.3 580,186 + BWI76_RS02835 0.42 +0.1 580,220 + BWI76_RS02835 0.45 +0.1 580,252 - BWI76_RS02835 0.48 -0.7 580,252 - BWI76_RS02835 0.48 +1.1 580,252 - BWI76_RS02835 0.48 +1.0 580,252 - BWI76_RS02835 0.48 +0.4 580,252 - BWI76_RS02835 0.48 +1.4 580,254 + BWI76_RS02835 0.48 -0.2 580,262 - BWI76_RS02835 0.49 +0.4 580,267 + BWI76_RS02835 0.49 -0.7 580,268 + BWI76_RS02835 0.49 -0.1 580,268 + BWI76_RS02835 0.49 +0.1 580,268 + BWI76_RS02835 0.49 -0.1 580,275 - BWI76_RS02835 0.50 -0.2 580,277 + BWI76_RS02835 0.50 +0.4 580,277 + BWI76_RS02835 0.50 +0.4 580,359 + BWI76_RS02835 0.57 -0.3 580,414 + BWI76_RS02835 0.62 +0.3 580,441 - BWI76_RS02835 0.64 -0.2 580,477 + BWI76_RS02835 0.68 -0.6 580,558 + BWI76_RS02835 0.75 -0.1 580,565 + BWI76_RS02835 0.75 +1.8 580,566 - BWI76_RS02835 0.75 -0.2 580,566 - BWI76_RS02835 0.75 -0.1 580,566 - -0.3 580,566 - BWI76_RS02835 0.75 +0.5 580,579 + -0.5 580,584 + BWI76_RS02835 0.77 -1.6 580,584 + BWI76_RS02835 0.77 +0.1 580,587 - BWI76_RS02835 0.77 +1.7 580,592 - BWI76_RS02835 0.78 +0.4 580,593 + BWI76_RS02835 0.78 +0.4 580,601 + BWI76_RS02835 0.78 -0.1 580,601 - BWI76_RS02835 0.78 +0.4 580,602 - BWI76_RS02835 0.79 +0.2 580,602 - BWI76_RS02835 0.79 -1.2 580,602 - BWI76_RS02835 0.79 -1.0 580,602 - BWI76_RS02835 0.79 +3.3 580,612 + +0.3 580,612 + BWI76_RS02835 0.79 -1.1 580,612 + BWI76_RS02835 0.79 +1.1 580,612 + BWI76_RS02835 0.79 +0.2 580,613 - BWI76_RS02835 0.80 -0.3 580,620 - BWI76_RS02835 0.80 +0.9 580,620 - BWI76_RS02835 0.80 -1.0 580,620 - BWI76_RS02835 0.80 +1.6 580,620 - BWI76_RS02835 0.80 -0.0 580,620 - BWI76_RS02835 0.80 -0.5 580,632 + BWI76_RS02835 0.81 -0.5 580,632 + BWI76_RS02835 0.81 +1.5 580,640 - BWI76_RS02835 0.82 -1.0 580,653 - BWI76_RS02835 0.83 -0.3 580,658 - BWI76_RS02835 0.83 +0.4 580,658 - BWI76_RS02835 0.83 -0.7 580,707 + BWI76_RS02835 0.88 -0.3 580,707 + BWI76_RS02835 0.88 +0.1 580,715 - BWI76_RS02835 0.88 +1.3 580,715 - BWI76_RS02835 0.88 +0.3 580,740 - -0.0 580,779 + +0.5 580,779 + +0.5 580,785 - +1.2 580,785 - +0.8 580,787 - +0.8 580,787 - -0.3 580,787 - -0.0 580,789 + -0.4 580,818 - -0.1 580,818 - -0.0 580,825 + -0.6 580,830 + +0.3 580,833 - +1.1 580,833 - -0.2 580,835 + +0.2 580,835 + -0.3 580,835 + +0.5 580,836 + -0.9 580,836 + +0.3 580,843 - +0.5 580,843 - -0.0 580,843 - +0.4 580,843 - -1.5 580,843 - -0.9 580,843 - +0.3 580,843 - -0.5 580,843 - +0.3 580,843 - +0.1 580,843 - +0.5 580,843 - -0.2 580,843 - +0.3 580,849 - +1.4 580,904 + +4.9 580,968 - +1.0 581,015 - +0.7 581,060 + -0.6 581,061 + -1.1 581,062 + -0.2 581,062 + -0.3 581,070 - +0.2 581,075 - +0.3 581,094 + +0.4 581,099 + -0.7 581,099 + +0.4 581,099 + +0.9 581,099 + +0.7 581,102 - +0.2 581,104 + +0.9 581,107 - -0.3 581,107 - +0.2 581,107 - -0.3 581,107 - -0.9 581,107 - -0.8 581,109 + -0.4 581,117 - -0.9 581,132 - -0.3 581,134 + -1.9 581,136 + -0.2 581,142 - +0.2 581,142 - +0.7 581,152 + -0.5 581,159 - +0.3 581,159 - -2.0 581,159 - -0.5 581,159 - +0.4 581,164 - -0.2 581,164 - +0.0 581,166 + -0.4 581,166 + +0.2 581,166 + -0.5 581,166 + +0.8 581,166 + -0.4 581,166 + +0.3 581,169 - +2.6 581,174 - -0.2 581,174 - -0.1 581,174 - +0.3 581,174 - +0.3 581,174 - +0.6 581,179 + +1.8 581,187 - +0.3 581,197 - +0.3 581,197 - -0.5 581,215 - BWI76_RS02840 0.11 +0.6 581,306 + BWI76_RS02840 0.17 +0.3 581,309 + BWI76_RS02840 0.17 -0.2 581,365 + BWI76_RS02840 0.21 +0.3 581,375 + BWI76_RS02840 0.22 +0.5 581,375 + BWI76_RS02840 0.22 +0.4 581,380 + BWI76_RS02840 0.22 -0.3 581,380 + BWI76_RS02840 0.22 -0.3 581,382 + BWI76_RS02840 0.22 +0.3 581,382 + BWI76_RS02840 0.22 -0.8 581,383 - BWI76_RS02840 0.22 +0.4 581,388 - BWI76_RS02840 0.22 -0.2 581,390 - BWI76_RS02840 0.23 -0.4 581,390 - BWI76_RS02840 0.23 +0.0 581,390 - BWI76_RS02840 0.23 +0.5 581,429 - BWI76_RS02840 0.25 -0.3 581,452 - BWI76_RS02840 0.27 -1.1 581,461 - BWI76_RS02840 0.27 +0.1 581,506 + BWI76_RS02840 0.30 -0.4 581,509 - BWI76_RS02840 0.30 -0.3 581,514 - BWI76_RS02840 0.31 -0.7 581,525 + BWI76_RS02840 0.31 -0.1 581,533 - BWI76_RS02840 0.32 -0.2 581,555 - BWI76_RS02840 0.33 -1.0 581,562 + BWI76_RS02840 0.34 -0.1 581,570 - BWI76_RS02840 0.34 -1.3 581,588 - BWI76_RS02840 0.36 -0.8 581,699 + BWI76_RS02840 0.43 +0.1 581,709 + BWI76_RS02840 0.44 +0.1 581,709 - BWI76_RS02840 0.44 +0.6 581,775 + BWI76_RS02840 0.48 -0.6 581,847 - BWI76_RS02840 0.53 -0.0 581,883 + BWI76_RS02840 0.55 +0.3 581,948 - BWI76_RS02840 0.59 -1.0 581,971 + BWI76_RS02840 0.61 +0.1 582,007 - BWI76_RS02840 0.63 -0.5 582,014 - BWI76_RS02840 0.64 -1.1 582,022 - BWI76_RS02840 0.64 +0.1 582,022 - BWI76_RS02840 0.64 -0.1 582,142 + BWI76_RS02840 0.72 +0.1 582,167 - BWI76_RS02840 0.74 -1.5 582,216 + BWI76_RS02840 0.77 -0.1 582,382 - BWI76_RS02840 0.88 +2.6 582,402 - BWI76_RS02840 0.89 -1.9 582,433 - -1.1 582,436 + +0.9 582,436 + +0.5 582,436 + -0.4 582,436 + -0.2 582,455 - +0.5 582,455 - -0.9 582,475 + -0.6 582,484 - +0.8 582,487 + -1.8 582,524 - -0.6 582,548 + -0.3 582,573 + +0.6 582,608 + +2.3 582,616 + +0.1 582,676 + +0.1 582,731 - +0.0 582,963 + -0.9
Or see this region's nucleotide sequence