Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11895

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11890 and BWI76_RS11895 are separated by 16 nucleotidesBWI76_RS11895 and BWI76_RS11900 overlap by 29 nucleotidesBWI76_RS11900 and BWI76_RS11905 overlap by 4 nucleotides BWI76_RS11890: BWI76_RS11890 - glycosyl hydrolase, at 2,501,942 to 2,504,299 _RS11890 BWI76_RS11895: BWI76_RS11895 - AraC family transcriptional regulator, at 2,504,316 to 2,505,290 _RS11895 BWI76_RS11900: BWI76_RS11900 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 2,505,262 to 2,505,852 _RS11900 BWI76_RS11905: BWI76_RS11905 - NAD(P)-dependent oxidoreductase, at 2,505,849 to 2,506,610 _RS11905 Position (kb) 2504 2505 2506Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 2503.941 kb on - strand, within BWI76_RS11890at 2504.082 kb on - strandat 2504.192 kb on + strandat 2504.206 kb on - strandat 2504.550 kb on - strand, within BWI76_RS11895at 2504.629 kb on - strand, within BWI76_RS11895at 2505.106 kb on - strand, within BWI76_RS11895at 2505.235 kb on + strandat 2505.235 kb on + strandat 2505.322 kb on - strand, within BWI76_RS11900at 2505.820 kb on + strandat 2506.228 kb on - strand, within BWI76_RS11905

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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2,503,941 - BWI76_RS11890 0.85 +0.6
2,504,082 - +6.0
2,504,192 + +0.1
2,504,206 - -0.3
2,504,550 - BWI76_RS11895 0.24 +0.6
2,504,629 - BWI76_RS11895 0.32 +0.0
2,505,106 - BWI76_RS11895 0.81 +4.1
2,505,235 + +0.6
2,505,235 + +0.5
2,505,322 - BWI76_RS11900 0.10 -0.7
2,505,820 + +0.6
2,506,228 - BWI76_RS11905 0.50 +1.1

Or see this region's nucleotide sequence