Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05665 and BWI76_RS05670 are separated by 103 nucleotides BWI76_RS05670 and BWI76_RS05675 are separated by 123 nucleotides
BWI76_RS05665: BWI76_RS05665 - SAM-dependent methyltransferase, at 1,189,000 to 1,190,628
_RS05665
BWI76_RS05670: BWI76_RS05670 - porin, at 1,190,732 to 1,192,072
_RS05670
BWI76_RS05675: BWI76_RS05675 - MFS transporter, at 1,192,196 to 1,193,593
_RS05675
Position (kb) 1190
1191
1192
1193 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 1189.754 kb on + strand, within BWI76_RS05665 at 1189.968 kb on - strand, within BWI76_RS05665 at 1189.999 kb on - strand, within BWI76_RS05665 at 1190.044 kb on - strand, within BWI76_RS05665 at 1190.044 kb on - strand, within BWI76_RS05665 at 1190.254 kb on - strand, within BWI76_RS05665 at 1190.480 kb on + strand at 1190.654 kb on - strand at 1190.815 kb on + strand at 1190.835 kb on - strand at 1190.853 kb on + strand at 1190.853 kb on + strand at 1190.853 kb on + strand at 1190.945 kb on - strand, within BWI76_RS05670 at 1190.999 kb on + strand, within BWI76_RS05670 at 1191.166 kb on - strand, within BWI76_RS05670 at 1191.264 kb on + strand, within BWI76_RS05670 at 1191.481 kb on + strand, within BWI76_RS05670 at 1191.500 kb on - strand, within BWI76_RS05670 at 1191.603 kb on - strand, within BWI76_RS05670 at 1191.675 kb on - strand, within BWI76_RS05670 at 1191.836 kb on - strand, within BWI76_RS05670 at 1191.855 kb on + strand, within BWI76_RS05670 at 1191.947 kb on + strand at 1192.016 kb on + strand at 1192.023 kb on + strand at 1192.067 kb on + strand at 1192.111 kb on + strand at 1192.184 kb on + strand at 1192.329 kb on - strand at 1192.345 kb on + strand, within BWI76_RS05675 at 1192.366 kb on + strand, within BWI76_RS05675 at 1192.374 kb on - strand, within BWI76_RS05675 at 1192.379 kb on - strand, within BWI76_RS05675 at 1192.388 kb on + strand, within BWI76_RS05675 at 1192.451 kb on + strand, within BWI76_RS05675 at 1192.468 kb on + strand, within BWI76_RS05675 at 1192.469 kb on + strand, within BWI76_RS05675 at 1192.632 kb on - strand, within BWI76_RS05675 at 1192.646 kb on + strand, within BWI76_RS05675 at 1192.660 kb on - strand, within BWI76_RS05675 at 1192.741 kb on - strand, within BWI76_RS05675 at 1192.759 kb on + strand, within BWI76_RS05675 at 1192.759 kb on + strand, within BWI76_RS05675 at 1192.759 kb on + strand, within BWI76_RS05675 at 1192.798 kb on + strand, within BWI76_RS05675 at 1192.805 kb on - strand, within BWI76_RS05675 at 1192.820 kb on + strand, within BWI76_RS05675 at 1192.861 kb on - strand, within BWI76_RS05675 at 1192.979 kb on + strand, within BWI76_RS05675 at 1192.980 kb on - strand, within BWI76_RS05675
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,189,754 + BWI76_RS05665 0.46 -1.0 1,189,968 - BWI76_RS05665 0.59 -1.2 1,189,999 - BWI76_RS05665 0.61 -1.0 1,190,044 - BWI76_RS05665 0.64 -0.7 1,190,044 - BWI76_RS05665 0.64 +0.1 1,190,254 - BWI76_RS05665 0.77 -0.2 1,190,480 + -0.6 1,190,654 - -1.6 1,190,815 + +4.1 1,190,835 - -0.6 1,190,853 + -0.1 1,190,853 + -0.0 1,190,853 + +1.7 1,190,945 - BWI76_RS05670 0.16 -0.1 1,190,999 + BWI76_RS05670 0.20 -1.1 1,191,166 - BWI76_RS05670 0.32 -0.4 1,191,264 + BWI76_RS05670 0.40 +0.1 1,191,481 + BWI76_RS05670 0.56 -0.4 1,191,500 - BWI76_RS05670 0.57 -0.5 1,191,603 - BWI76_RS05670 0.65 +7.6 1,191,675 - BWI76_RS05670 0.70 +0.0 1,191,836 - BWI76_RS05670 0.82 +0.2 1,191,855 + BWI76_RS05670 0.84 -0.4 1,191,947 + +0.4 1,192,016 + -0.2 1,192,023 + +0.1 1,192,067 + +2.9 1,192,111 + +0.1 1,192,184 + +0.6 1,192,329 - +0.5 1,192,345 + BWI76_RS05675 0.11 +0.6 1,192,366 + BWI76_RS05675 0.12 +3.0 1,192,374 - BWI76_RS05675 0.13 +0.2 1,192,379 - BWI76_RS05675 0.13 +0.5 1,192,388 + BWI76_RS05675 0.14 -0.3 1,192,451 + BWI76_RS05675 0.18 -0.5 1,192,468 + BWI76_RS05675 0.19 +2.0 1,192,469 + BWI76_RS05675 0.20 -1.0 1,192,632 - BWI76_RS05675 0.31 -0.2 1,192,646 + BWI76_RS05675 0.32 +0.1 1,192,660 - BWI76_RS05675 0.33 -0.3 1,192,741 - BWI76_RS05675 0.39 -0.1 1,192,759 + BWI76_RS05675 0.40 -0.8 1,192,759 + BWI76_RS05675 0.40 -0.4 1,192,759 + BWI76_RS05675 0.40 -2.4 1,192,798 + BWI76_RS05675 0.43 -0.4 1,192,805 - BWI76_RS05675 0.44 -1.0 1,192,820 + BWI76_RS05675 0.45 +1.2 1,192,861 - BWI76_RS05675 0.48 -0.6 1,192,979 + BWI76_RS05675 0.56 -0.1 1,192,980 - BWI76_RS05675 0.56 -1.1
Or see this region's nucleotide sequence