Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03115 and BWI76_RS03120 are separated by 139 nucleotides BWI76_RS03120 and BWI76_RS03125 are separated by 5 nucleotides BWI76_RS03125 and BWI76_RS03130 are separated by 10 nucleotides
BWI76_RS03115: BWI76_RS03115 - ABC transporter substrate-binding protein, at 641,872 to 643,182
_RS03115
BWI76_RS03120: BWI76_RS03120 - ABC transporter ATP-binding protein, at 643,322 to 644,392
_RS03120
BWI76_RS03125: BWI76_RS03125 - phosphodiesterase, at 644,398 to 645,222
_RS03125
BWI76_RS03130: BWI76_RS03130 - putative SN-glycerol-3-phosphate transport system permease, at 645,233 to 646,120
_RS03130
Position (kb) 643
644
645 Strain fitness (log2 ratio) -1
0
1
2 at 642.365 kb on + strand, within BWI76_RS03115 at 642.570 kb on - strand, within BWI76_RS03115 at 642.648 kb on + strand, within BWI76_RS03115 at 642.687 kb on - strand, within BWI76_RS03115 at 642.773 kb on - strand, within BWI76_RS03115 at 642.859 kb on - strand, within BWI76_RS03115 at 642.867 kb on - strand, within BWI76_RS03115 at 642.984 kb on + strand, within BWI76_RS03115 at 643.062 kb on - strand at 643.079 kb on - strand at 643.137 kb on + strand at 643.137 kb on + strand at 643.137 kb on + strand at 643.137 kb on + strand at 643.137 kb on + strand at 643.145 kb on - strand at 643.145 kb on - strand at 643.145 kb on - strand at 643.145 kb on - strand at 643.145 kb on - strand at 643.149 kb on + strand at 643.237 kb on + strand at 643.245 kb on - strand at 643.458 kb on - strand, within BWI76_RS03120 at 643.468 kb on - strand, within BWI76_RS03120 at 643.562 kb on + strand, within BWI76_RS03120 at 643.628 kb on + strand, within BWI76_RS03120 at 643.736 kb on + strand, within BWI76_RS03120 at 643.744 kb on - strand, within BWI76_RS03120 at 643.827 kb on - strand, within BWI76_RS03120 at 644.049 kb on + strand, within BWI76_RS03120 at 644.247 kb on - strand, within BWI76_RS03120 at 644.269 kb on - strand, within BWI76_RS03120 at 644.616 kb on + strand at 644.699 kb on - strand, within BWI76_RS03125 at 644.908 kb on - strand, within BWI76_RS03125 at 644.965 kb on - strand, within BWI76_RS03125 at 645.084 kb on + strand, within BWI76_RS03125 at 645.103 kb on + strand, within BWI76_RS03125 at 645.103 kb on + strand, within BWI76_RS03125 at 645.105 kb on + strand, within BWI76_RS03125
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 642,365 + BWI76_RS03115 0.38 -0.3 642,570 - BWI76_RS03115 0.53 -1.0 642,648 + BWI76_RS03115 0.59 -0.0 642,687 - BWI76_RS03115 0.62 -1.5 642,773 - BWI76_RS03115 0.69 +0.1 642,859 - BWI76_RS03115 0.75 -0.0 642,867 - BWI76_RS03115 0.76 -0.2 642,984 + BWI76_RS03115 0.85 -0.8 643,062 - -1.0 643,079 - -1.0 643,137 + +1.6 643,137 + +0.0 643,137 + -1.2 643,137 + -0.4 643,137 + -0.3 643,145 - -0.1 643,145 - -1.3 643,145 - -0.3 643,145 - -0.6 643,145 - +0.7 643,149 + -0.4 643,237 + -1.2 643,245 - -1.7 643,458 - BWI76_RS03120 0.13 +1.9 643,468 - BWI76_RS03120 0.14 +0.2 643,562 + BWI76_RS03120 0.22 -0.7 643,628 + BWI76_RS03120 0.29 -1.3 643,736 + BWI76_RS03120 0.39 +0.1 643,744 - BWI76_RS03120 0.39 -0.4 643,827 - BWI76_RS03120 0.47 -0.1 644,049 + BWI76_RS03120 0.68 +0.0 644,247 - BWI76_RS03120 0.86 +0.4 644,269 - BWI76_RS03120 0.88 +2.7 644,616 + +0.8 644,699 - BWI76_RS03125 0.36 +0.4 644,908 - BWI76_RS03125 0.62 -0.2 644,965 - BWI76_RS03125 0.69 +0.1 645,084 + BWI76_RS03125 0.83 +1.3 645,103 + BWI76_RS03125 0.85 -1.4 645,103 + BWI76_RS03125 0.85 -1.1 645,105 + BWI76_RS03125 0.86 +0.3
Or see this region's nucleotide sequence