Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27065 and BWI76_RS27070 are separated by 101 nucleotides BWI76_RS27070 and BWI76_RS27075 are separated by 118 nucleotides BWI76_RS27075 and BWI76_RS27080 are separated by 217 nucleotides
BWI76_RS27065: BWI76_RS27065 - valine--pyruvate transaminase, at 5,616,666 to 5,617,925
_RS27065
BWI76_RS27070: BWI76_RS27070 - 4Fe-4S ferredoxin, at 5,618,027 to 5,618,515
_RS27070
BWI76_RS27075: BWI76_RS27075 - IclR family transcriptional regulator, at 5,618,634 to 5,619,452
_RS27075
BWI76_RS27080: BWI76_RS27080 - 3-dehydro-L-gulonate 2-dehydrogenase, at 5,619,670 to 5,620,668
_RS27080
Position (kb) 5618
5619
5620 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5617.696 kb on + strand, within BWI76_RS27065 at 5617.697 kb on + strand, within BWI76_RS27065 at 5617.705 kb on - strand, within BWI76_RS27065 at 5617.763 kb on - strand, within BWI76_RS27065 at 5617.903 kb on + strand at 5617.913 kb on + strand at 5617.969 kb on - strand at 5618.091 kb on + strand, within BWI76_RS27070 at 5618.104 kb on - strand at 5618.185 kb on + strand, within BWI76_RS27070 at 5618.224 kb on + strand, within BWI76_RS27070 at 5618.234 kb on - strand, within BWI76_RS27070 at 5618.255 kb on + strand, within BWI76_RS27070 at 5618.413 kb on + strand, within BWI76_RS27070 at 5618.413 kb on + strand, within BWI76_RS27070 at 5618.421 kb on - strand, within BWI76_RS27070 at 5618.423 kb on + strand, within BWI76_RS27070 at 5618.431 kb on - strand, within BWI76_RS27070 at 5618.431 kb on - strand, within BWI76_RS27070 at 5618.431 kb on - strand, within BWI76_RS27070 at 5618.638 kb on + strand at 5618.800 kb on + strand, within BWI76_RS27075 at 5618.906 kb on - strand, within BWI76_RS27075 at 5618.995 kb on + strand, within BWI76_RS27075 at 5619.003 kb on + strand, within BWI76_RS27075 at 5619.100 kb on - strand, within BWI76_RS27075 at 5619.196 kb on - strand, within BWI76_RS27075 at 5619.264 kb on + strand, within BWI76_RS27075 at 5619.392 kb on + strand at 5619.790 kb on - strand, within BWI76_RS27080 at 5619.793 kb on + strand, within BWI76_RS27080 at 5619.837 kb on + strand, within BWI76_RS27080 at 5619.974 kb on + strand, within BWI76_RS27080 at 5619.990 kb on - strand, within BWI76_RS27080 at 5619.991 kb on - strand, within BWI76_RS27080 at 5620.042 kb on - strand, within BWI76_RS27080 at 5620.112 kb on + strand, within BWI76_RS27080 at 5620.215 kb on + strand, within BWI76_RS27080 at 5620.223 kb on - strand, within BWI76_RS27080 at 5620.326 kb on + strand, within BWI76_RS27080 at 5620.337 kb on + strand, within BWI76_RS27080 at 5620.386 kb on + strand, within BWI76_RS27080 at 5620.389 kb on + strand, within BWI76_RS27080
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,617,696 + BWI76_RS27065 0.82 +0.4 5,617,697 + BWI76_RS27065 0.82 +0.1 5,617,705 - BWI76_RS27065 0.82 +3.2 5,617,763 - BWI76_RS27065 0.87 -0.9 5,617,903 + -2.3 5,617,913 + -0.1 5,617,969 - -1.6 5,618,091 + BWI76_RS27070 0.13 -0.9 5,618,104 - +1.3 5,618,185 + BWI76_RS27070 0.32 +0.2 5,618,224 + BWI76_RS27070 0.40 +1.2 5,618,234 - BWI76_RS27070 0.42 +1.3 5,618,255 + BWI76_RS27070 0.47 +0.1 5,618,413 + BWI76_RS27070 0.79 +0.1 5,618,413 + BWI76_RS27070 0.79 +0.8 5,618,421 - BWI76_RS27070 0.81 +0.3 5,618,423 + BWI76_RS27070 0.81 +0.7 5,618,431 - BWI76_RS27070 0.83 +0.2 5,618,431 - BWI76_RS27070 0.83 +2.5 5,618,431 - BWI76_RS27070 0.83 +0.3 5,618,638 + -0.0 5,618,800 + BWI76_RS27075 0.20 -0.7 5,618,906 - BWI76_RS27075 0.33 -2.3 5,618,995 + BWI76_RS27075 0.44 -0.8 5,619,003 + BWI76_RS27075 0.45 -1.5 5,619,100 - BWI76_RS27075 0.57 -1.7 5,619,196 - BWI76_RS27075 0.69 -1.6 5,619,264 + BWI76_RS27075 0.77 -0.7 5,619,392 + -3.9 5,619,790 - BWI76_RS27080 0.12 -1.1 5,619,793 + BWI76_RS27080 0.12 -0.8 5,619,837 + BWI76_RS27080 0.17 -1.2 5,619,974 + BWI76_RS27080 0.30 +0.4 5,619,990 - BWI76_RS27080 0.32 +0.1 5,619,991 - BWI76_RS27080 0.32 +1.2 5,620,042 - BWI76_RS27080 0.37 +0.9 5,620,112 + BWI76_RS27080 0.44 -1.3 5,620,215 + BWI76_RS27080 0.55 -0.2 5,620,223 - BWI76_RS27080 0.55 -1.4 5,620,326 + BWI76_RS27080 0.66 +0.1 5,620,337 + BWI76_RS27080 0.67 -1.1 5,620,386 + BWI76_RS27080 0.72 -0.9 5,620,389 + BWI76_RS27080 0.72 -0.8
Or see this region's nucleotide sequence