Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26325 and BWI76_RS26330 are separated by 44 nucleotides BWI76_RS26330 and BWI76_RS26335 are separated by 13 nucleotides BWI76_RS26335 and BWI76_RS26340 overlap by 4 nucleotides
BWI76_RS26325: BWI76_RS26325 - altronate hydrolase, at 5,448,974 to 5,450,569
_RS26325
BWI76_RS26330: BWI76_RS26330 - ABC transporter ATP-binding protein, at 5,450,614 to 5,451,315
_RS26330
BWI76_RS26335: BWI76_RS26335 - ABC transporter ATP-binding protein, at 5,451,329 to 5,452,096
_RS26335
BWI76_RS26340: BWI76_RS26340 - branched-chain amino acid ABC transporter permease, at 5,452,093 to 5,453,373
_RS26340
Position (kb) 5451
5452
5453 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5450.506 kb on + strand at 5450.528 kb on - strand at 5450.839 kb on - strand, within BWI76_RS26330 at 5450.951 kb on + strand, within BWI76_RS26330 at 5451.036 kb on - strand, within BWI76_RS26330 at 5451.133 kb on + strand, within BWI76_RS26330 at 5451.230 kb on + strand, within BWI76_RS26330 at 5451.290 kb on + strand at 5451.407 kb on + strand, within BWI76_RS26335 at 5451.472 kb on + strand, within BWI76_RS26335 at 5451.591 kb on + strand, within BWI76_RS26335 at 5451.738 kb on - strand, within BWI76_RS26335 at 5452.303 kb on - strand, within BWI76_RS26340 at 5452.311 kb on - strand, within BWI76_RS26340 at 5452.353 kb on - strand, within BWI76_RS26340 at 5452.518 kb on - strand, within BWI76_RS26340 at 5452.548 kb on + strand at 5452.574 kb on + strand, within BWI76_RS26340 at 5452.712 kb on - strand, within BWI76_RS26340 at 5452.712 kb on - strand, within BWI76_RS26340 at 5452.844 kb on + strand, within BWI76_RS26340 at 5452.885 kb on - strand, within BWI76_RS26340 at 5452.951 kb on + strand, within BWI76_RS26340 at 5452.992 kb on + strand, within BWI76_RS26340 at 5453.083 kb on - strand, within BWI76_RS26340
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 5,450,506 + -0.1 5,450,528 - -0.7 5,450,839 - BWI76_RS26330 0.32 -1.0 5,450,951 + BWI76_RS26330 0.48 +0.0 5,451,036 - BWI76_RS26330 0.60 +0.3 5,451,133 + BWI76_RS26330 0.74 -1.1 5,451,230 + BWI76_RS26330 0.88 -0.2 5,451,290 + -1.0 5,451,407 + BWI76_RS26335 0.10 -1.7 5,451,472 + BWI76_RS26335 0.19 -0.6 5,451,591 + BWI76_RS26335 0.34 -1.5 5,451,738 - BWI76_RS26335 0.53 -0.3 5,452,303 - BWI76_RS26340 0.16 -1.2 5,452,311 - BWI76_RS26340 0.17 -0.3 5,452,353 - BWI76_RS26340 0.20 +2.4 5,452,518 - BWI76_RS26340 0.33 -0.2 5,452,548 + +0.1 5,452,574 + BWI76_RS26340 0.38 -2.0 5,452,712 - BWI76_RS26340 0.48 -0.7 5,452,712 - BWI76_RS26340 0.48 +4.8 5,452,844 + BWI76_RS26340 0.59 +0.6 5,452,885 - BWI76_RS26340 0.62 +0.7 5,452,951 + BWI76_RS26340 0.67 -1.6 5,452,992 + BWI76_RS26340 0.70 -0.4 5,453,083 - BWI76_RS26340 0.77 +0.2
Or see this region's nucleotide sequence