Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22175

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22170 and BWI76_RS22175 are separated by 130 nucleotidesBWI76_RS22175 and BWI76_RS22180 are separated by 70 nucleotides BWI76_RS22170: BWI76_RS22170 - alanine--tRNA ligase, at 4,622,705 to 4,625,332 _RS22170 BWI76_RS22175: BWI76_RS22175 - recombination regulator RecX, at 4,625,463 to 4,625,963 _RS22175 BWI76_RS22180: BWI76_RS22180 - recombinase RecA, at 4,626,034 to 4,627,092 _RS22180 Position (kb) 4625 4626Strain fitness (log2 ratio) -1 0 1at 4625.512 kb on + strandat 4625.514 kb on - strand, within BWI76_RS22175at 4625.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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4,625,512 + +0.3
4,625,514 - BWI76_RS22175 0.10 +0.2
4,625,936 - -1.0

Or see this region's nucleotide sequence