Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09270

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09265 and BWI76_RS09270 are separated by 140 nucleotidesBWI76_RS09270 and BWI76_RS09275 are separated by 16 nucleotides BWI76_RS09265: BWI76_RS09265 - oxidoreductase, at 1,951,152 to 1,952,915 _RS09265 BWI76_RS09270: BWI76_RS09270 - capsid scaffold-like protein, at 1,953,056 to 1,953,889 _RS09270 BWI76_RS09275: BWI76_RS09275 - major capsid protein, at 1,953,906 to 1,954,958 _RS09275 Position (kb) 1953 1954Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1952.190 kb on + strand, within BWI76_RS09265at 1952.244 kb on - strand, within BWI76_RS09265at 1952.260 kb on + strand, within BWI76_RS09265at 1952.272 kb on + strand, within BWI76_RS09265at 1952.370 kb on - strand, within BWI76_RS09265at 1952.374 kb on - strand, within BWI76_RS09265at 1952.374 kb on - strand, within BWI76_RS09265at 1952.410 kb on - strand, within BWI76_RS09265at 1952.599 kb on - strand, within BWI76_RS09265at 1952.750 kb on + strandat 1952.767 kb on - strandat 1952.767 kb on - strandat 1952.935 kb on + strandat 1952.938 kb on - strandat 1952.993 kb on + strandat 1953.153 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.420 kb on + strand, within BWI76_RS09270at 1953.694 kb on - strand, within BWI76_RS09270at 1953.741 kb on - strand, within BWI76_RS09270at 1954.046 kb on - strand, within BWI76_RS09275at 1954.208 kb on - strand, within BWI76_RS09275at 1954.310 kb on + strand, within BWI76_RS09275at 1954.325 kb on - strand, within BWI76_RS09275at 1954.356 kb on - strand, within BWI76_RS09275at 1954.620 kb on - strand, within BWI76_RS09275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
1,952,190 + BWI76_RS09265 0.59 -0.5
1,952,244 - BWI76_RS09265 0.62 -1.3
1,952,260 + BWI76_RS09265 0.63 +0.8
1,952,272 + BWI76_RS09265 0.63 +1.2
1,952,370 - BWI76_RS09265 0.69 -0.2
1,952,374 - BWI76_RS09265 0.69 -0.1
1,952,374 - BWI76_RS09265 0.69 -0.1
1,952,410 - BWI76_RS09265 0.71 -1.5
1,952,599 - BWI76_RS09265 0.82 -0.7
1,952,750 + -0.3
1,952,767 - +0.2
1,952,767 - -0.7
1,952,935 + +0.1
1,952,938 - -0.2
1,952,993 + +0.2
1,953,153 + BWI76_RS09270 0.12 +0.3
1,953,166 + BWI76_RS09270 0.13 -0.1
1,953,166 + BWI76_RS09270 0.13 -0.2
1,953,166 + BWI76_RS09270 0.13 +0.2
1,953,209 + BWI76_RS09270 0.18 +1.0
1,953,209 + BWI76_RS09270 0.18 +4.4
1,953,209 + BWI76_RS09270 0.18 +1.9
1,953,420 + BWI76_RS09270 0.44 +0.2
1,953,694 - BWI76_RS09270 0.76 +5.2
1,953,741 - BWI76_RS09270 0.82 +0.2
1,954,046 - BWI76_RS09275 0.13 +0.1
1,954,208 - BWI76_RS09275 0.29 +0.2
1,954,310 + BWI76_RS09275 0.38 -1.2
1,954,325 - BWI76_RS09275 0.40 -1.9
1,954,356 - BWI76_RS09275 0.43 +0.4
1,954,620 - BWI76_RS09275 0.68 -1.4

Or see this region's nucleotide sequence