Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08405

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08390 and BWI76_RS08395 overlap by 17 nucleotidesBWI76_RS08395 and BWI76_RS08400 overlap by 7 nucleotidesBWI76_RS08400 and BWI76_RS08405 overlap by 1 nucleotidesBWI76_RS08405 and BWI76_RS08410 are separated by 15 nucleotides BWI76_RS08390: BWI76_RS08390 - hypothetical protein, at 1,775,399 to 1,775,617 _RS08390 BWI76_RS08395: BWI76_RS08395 - succinate dehydrogenase cytochrome b556 large subunit, at 1,775,601 to 1,776,005 _RS08395 BWI76_RS08400: BWI76_RS08400 - succinate dehydrogenase cytochrome b556 small membrane subunit, at 1,775,999 to 1,776,346 _RS08400 BWI76_RS08405: BWI76_RS08405 - succinate dehydrogenase flavoprotein subunit, at 1,776,346 to 1,778,112 _RS08405 BWI76_RS08410: BWI76_RS08410 - succinate dehydrogenase iron-sulfur subunit, at 1,778,128 to 1,778,844 _RS08410 Position (kb) 1776 1777 1778 1779Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1775.450 kb on + strand, within BWI76_RS08390at 1775.461 kb on - strand, within BWI76_RS08390at 1775.658 kb on - strandat 1775.929 kb on - strand, within BWI76_RS08395at 1776.180 kb on - strand, within BWI76_RS08400at 1776.331 kb on + strandat 1776.374 kb on - strandat 1776.384 kb on - strandat 1776.438 kb on + strandat 1776.569 kb on + strand, within BWI76_RS08405at 1776.836 kb on + strand, within BWI76_RS08405at 1776.973 kb on - strand, within BWI76_RS08405at 1777.484 kb on + strand, within BWI76_RS08405at 1777.793 kb on + strand, within BWI76_RS08405at 1778.846 kb on - strandat 1778.981 kb on + strandat 1779.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,775,450 + BWI76_RS08390 0.23 -2.1
1,775,461 - BWI76_RS08390 0.28 -1.7
1,775,658 - -0.8
1,775,929 - BWI76_RS08395 0.81 -3.7
1,776,180 - BWI76_RS08400 0.52 -1.1
1,776,331 + -4.3
1,776,374 - +1.2
1,776,384 - -0.1
1,776,438 + +1.2
1,776,569 + BWI76_RS08405 0.13 -3.4
1,776,836 + BWI76_RS08405 0.28 -0.6
1,776,973 - BWI76_RS08405 0.35 -0.0
1,777,484 + BWI76_RS08405 0.64 -1.0
1,777,793 + BWI76_RS08405 0.82 -0.8
1,778,846 - -0.6
1,778,981 + -0.6
1,779,007 + -2.2

Or see this region's nucleotide sequence