Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06210 and BWI76_RS06215 are separated by 37 nucleotides BWI76_RS06215 and BWI76_RS06220 are separated by 288 nucleotides BWI76_RS06220 and BWI76_RS06225 overlap by 4 nucleotides
BWI76_RS06210: BWI76_RS06210 - fructokinase, at 1,301,468 to 1,302,426
_RS06210
BWI76_RS06215: BWI76_RS06215 - NUDIX hydrolase, at 1,302,464 to 1,302,826
_RS06215
BWI76_RS06220: BWI76_RS06220 - exonuclease subunit SbcC, at 1,303,115 to 1,306,249
_RS06220
BWI76_RS06225: BWI76_RS06225 - exonuclease sbcCD subunit D, at 1,306,246 to 1,307,448
_RS06225
Position (kb) 1303
1304
1305
1306
1307 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 1302.125 kb on + strand, within BWI76_RS06210 at 1302.146 kb on + strand, within BWI76_RS06210 at 1302.154 kb on - strand, within BWI76_RS06210 at 1302.308 kb on - strand, within BWI76_RS06210 at 1302.308 kb on - strand, within BWI76_RS06210 at 1302.454 kb on + strand at 1302.490 kb on - strand at 1302.530 kb on + strand, within BWI76_RS06215 at 1303.027 kb on - strand at 1303.354 kb on + strand at 1303.527 kb on - strand, within BWI76_RS06220 at 1303.976 kb on - strand, within BWI76_RS06220 at 1303.997 kb on + strand, within BWI76_RS06220 at 1304.106 kb on - strand, within BWI76_RS06220 at 1304.814 kb on + strand, within BWI76_RS06220 at 1305.012 kb on + strand, within BWI76_RS06220 at 1305.020 kb on - strand, within BWI76_RS06220 at 1305.229 kb on - strand, within BWI76_RS06220 at 1305.804 kb on - strand, within BWI76_RS06220 at 1306.072 kb on - strand at 1306.072 kb on - strand at 1306.174 kb on + strand at 1306.296 kb on + strand at 1306.427 kb on - strand, within BWI76_RS06225 at 1306.854 kb on - strand, within BWI76_RS06225 at 1306.946 kb on - strand, within BWI76_RS06225 at 1307.040 kb on - strand, within BWI76_RS06225
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 1,302,125 + BWI76_RS06210 0.69 +0.2 1,302,146 + BWI76_RS06210 0.71 -0.2 1,302,154 - BWI76_RS06210 0.72 -0.3 1,302,308 - BWI76_RS06210 0.88 -0.4 1,302,308 - BWI76_RS06210 0.88 +0.2 1,302,454 + +0.0 1,302,490 - -0.1 1,302,530 + BWI76_RS06215 0.18 -1.0 1,303,027 - -0.1 1,303,354 + +0.0 1,303,527 - BWI76_RS06220 0.13 +0.1 1,303,976 - BWI76_RS06220 0.27 +0.8 1,303,997 + BWI76_RS06220 0.28 +7.2 1,304,106 - BWI76_RS06220 0.32 -0.4 1,304,814 + BWI76_RS06220 0.54 -0.9 1,305,012 + BWI76_RS06220 0.61 +5.0 1,305,020 - BWI76_RS06220 0.61 -2.0 1,305,229 - BWI76_RS06220 0.67 -0.7 1,305,804 - BWI76_RS06220 0.86 -0.1 1,306,072 - +0.1 1,306,072 - -2.0 1,306,174 + +0.3 1,306,296 + +0.5 1,306,427 - BWI76_RS06225 0.15 -0.7 1,306,854 - BWI76_RS06225 0.51 +1.2 1,306,946 - BWI76_RS06225 0.58 -0.6 1,307,040 - BWI76_RS06225 0.66 -0.0
Or see this region's nucleotide sequence