Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04535 and BWI76_RS04540 are separated by 244 nucleotides BWI76_RS04540 and BWI76_RS04545 are separated by 30 nucleotides BWI76_RS04545 and BWI76_RS04550 overlap by 11 nucleotides
BWI76_RS04535: BWI76_RS04535 - LPS assembly protein LptD, at 937,884 to 940,226
_RS04535
BWI76_RS04540: BWI76_RS04540 - molecular chaperone DjlA, at 940,471 to 941,298
_RS04540
BWI76_RS04545: BWI76_RS04545 - two-component response regulator for citrate, at 941,329 to 942,027
_RS04545
BWI76_RS04550: BWI76_RS04550 - two-component sensor kinase, at 942,017 to 943,642
_RS04550
Position (kb) 940
941
942 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 940.300 kb on - strand at 940.316 kb on - strand at 940.336 kb on + strand at 940.348 kb on + strand at 940.356 kb on - strand at 940.356 kb on - strand at 940.440 kb on - strand at 940.484 kb on - strand at 940.540 kb on + strand at 940.548 kb on - strand at 940.559 kb on + strand, within BWI76_RS04540 at 940.564 kb on + strand, within BWI76_RS04540 at 940.651 kb on - strand, within BWI76_RS04540 at 941.159 kb on + strand, within BWI76_RS04540 at 941.167 kb on - strand, within BWI76_RS04540 at 941.174 kb on - strand, within BWI76_RS04540 at 941.187 kb on - strand, within BWI76_RS04540 at 941.189 kb on - strand, within BWI76_RS04540 at 941.264 kb on + strand at 941.422 kb on + strand, within BWI76_RS04545 at 941.432 kb on - strand, within BWI76_RS04545 at 941.586 kb on - strand, within BWI76_RS04545 at 941.653 kb on + strand, within BWI76_RS04545 at 941.693 kb on + strand, within BWI76_RS04545 at 941.742 kb on + strand, within BWI76_RS04545 at 941.829 kb on + strand, within BWI76_RS04545 at 942.066 kb on + strand at 942.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 940,300 - +2.7 940,316 - -0.6 940,336 + -1.0 940,348 + +5.7 940,356 - -0.4 940,356 - -0.6 940,440 - +0.2 940,484 - -0.5 940,540 + +0.3 940,548 - -0.5 940,559 + BWI76_RS04540 0.11 -0.0 940,564 + BWI76_RS04540 0.11 +2.9 940,651 - BWI76_RS04540 0.22 -1.5 941,159 + BWI76_RS04540 0.83 +0.1 941,167 - BWI76_RS04540 0.84 +0.0 941,174 - BWI76_RS04540 0.85 +0.3 941,187 - BWI76_RS04540 0.86 -0.1 941,189 - BWI76_RS04540 0.87 +0.2 941,264 + +0.5 941,422 + BWI76_RS04545 0.13 +0.4 941,432 - BWI76_RS04545 0.15 -0.2 941,586 - BWI76_RS04545 0.37 +0.3 941,653 + BWI76_RS04545 0.46 +0.4 941,693 + BWI76_RS04545 0.52 +1.2 941,742 + BWI76_RS04545 0.59 +0.4 941,829 + BWI76_RS04545 0.72 -0.4 942,066 + -0.4 942,141 - +0.5
Or see this region's nucleotide sequence