Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04415 and BWI76_RS04420 are separated by 12 nucleotides BWI76_RS04420 and BWI76_RS04425 are separated by 15 nucleotides BWI76_RS04425 and BWI76_RS04430 are separated by 160 nucleotides
BWI76_RS04415: BWI76_RS04415 - oxaloacetate decarboxylase subunit beta, at 911,208 to 912,509
_RS04415
BWI76_RS04420: BWI76_RS04420 - oxaloacetate decarboxylase, at 912,522 to 914,288
_RS04420
BWI76_RS04425: BWI76_RS04425 - oxaloacetate decarboxylase subunit gamma, at 914,304 to 914,555
_RS04425
BWI76_RS04430: BWI76_RS04430 - citrate carrier protein, at 914,716 to 916,056
_RS04430
Position (kb) 912
913
914
915 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 912.549 kb on + strand at 912.731 kb on + strand, within BWI76_RS04420 at 912.828 kb on + strand, within BWI76_RS04420 at 912.852 kb on + strand, within BWI76_RS04420 at 913.020 kb on + strand, within BWI76_RS04420 at 913.157 kb on + strand, within BWI76_RS04420 at 913.533 kb on - strand, within BWI76_RS04420 at 913.647 kb on - strand, within BWI76_RS04420 at 913.825 kb on - strand, within BWI76_RS04420 at 913.835 kb on - strand, within BWI76_RS04420 at 913.863 kb on - strand, within BWI76_RS04420 at 914.101 kb on + strand at 914.511 kb on + strand, within BWI76_RS04425 at 914.540 kb on - strand at 914.630 kb on - strand at 914.820 kb on - strand at 914.820 kb on - strand at 914.836 kb on - strand at 914.861 kb on + strand, within BWI76_RS04430 at 914.866 kb on - strand, within BWI76_RS04430 at 914.868 kb on + strand, within BWI76_RS04430 at 915.014 kb on - strand, within BWI76_RS04430 at 915.019 kb on - strand, within BWI76_RS04430 at 915.121 kb on + strand, within BWI76_RS04430 at 915.129 kb on - strand, within BWI76_RS04430 at 915.136 kb on + strand, within BWI76_RS04430 at 915.214 kb on - strand, within BWI76_RS04430 at 915.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 912,549 + +0.7 912,731 + BWI76_RS04420 0.12 -0.2 912,828 + BWI76_RS04420 0.17 +0.0 912,852 + BWI76_RS04420 0.19 +0.0 913,020 + BWI76_RS04420 0.28 -0.3 913,157 + BWI76_RS04420 0.36 +2.8 913,533 - BWI76_RS04420 0.57 +0.2 913,647 - BWI76_RS04420 0.64 -1.1 913,825 - BWI76_RS04420 0.74 +1.2 913,835 - BWI76_RS04420 0.74 -0.6 913,863 - BWI76_RS04420 0.76 +4.6 914,101 + -0.2 914,511 + BWI76_RS04425 0.82 -0.2 914,540 - +0.2 914,630 - +0.0 914,820 - -1.7 914,820 - -0.7 914,836 - -0.3 914,861 + BWI76_RS04430 0.11 +1.2 914,866 - BWI76_RS04430 0.11 -0.9 914,868 + BWI76_RS04430 0.11 -0.1 915,014 - BWI76_RS04430 0.22 +0.2 915,019 - BWI76_RS04430 0.23 -0.9 915,121 + BWI76_RS04430 0.30 +3.2 915,129 - BWI76_RS04430 0.31 -0.2 915,136 + BWI76_RS04430 0.31 +0.1 915,214 - BWI76_RS04430 0.37 +0.1 915,244 + +3.4
Or see this region's nucleotide sequence