Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04130 and BWI76_RS04135 are separated by 77 nucleotides BWI76_RS04135 and BWI76_RS04140 are separated by 52 nucleotides
BWI76_RS04130: BWI76_RS04130 - 2-deoxyribose-5-phosphate aldolase, at 849,568 to 850,347
_RS04130
BWI76_RS04135: BWI76_RS04135 - thymidine phosphorylase, at 850,425 to 851,747
_RS04135
BWI76_RS04140: BWI76_RS04140 - phosphopentomutase, at 851,800 to 853,023
_RS04140
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 849.483 kb on - strand at 849.607 kb on - strand at 849.727 kb on - strand, within BWI76_RS04130 at 849.761 kb on + strand, within BWI76_RS04130 at 849.776 kb on + strand, within BWI76_RS04130 at 849.828 kb on + strand, within BWI76_RS04130 at 849.870 kb on - strand, within BWI76_RS04130 at 849.928 kb on - strand, within BWI76_RS04130 at 849.933 kb on - strand, within BWI76_RS04130 at 850.241 kb on - strand, within BWI76_RS04130 at 850.396 kb on + strand at 850.652 kb on - strand, within BWI76_RS04135 at 850.836 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.062 kb on + strand, within BWI76_RS04135 at 851.077 kb on - strand, within BWI76_RS04135 at 851.136 kb on + strand at 851.331 kb on + strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.339 kb on - strand, within BWI76_RS04135 at 851.661 kb on - strand at 851.663 kb on + strand at 851.752 kb on + strand at 851.755 kb on - strand at 851.760 kb on - strand at 851.896 kb on - strand at 851.972 kb on + strand, within BWI76_RS04140 at 851.980 kb on - strand, within BWI76_RS04140 at 851.990 kb on - strand, within BWI76_RS04140 at 852.095 kb on + strand, within BWI76_RS04140 at 852.195 kb on + strand, within BWI76_RS04140 at 852.378 kb on + strand, within BWI76_RS04140 at 852.585 kb on + strand, within BWI76_RS04140
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 849,483 - -0.4 849,607 - -0.7 849,727 - BWI76_RS04130 0.20 +0.4 849,761 + BWI76_RS04130 0.25 +1.0 849,776 + BWI76_RS04130 0.27 -1.3 849,828 + BWI76_RS04130 0.33 -0.1 849,870 - BWI76_RS04130 0.39 +1.2 849,928 - BWI76_RS04130 0.46 -0.0 849,933 - BWI76_RS04130 0.47 -1.0 850,241 - BWI76_RS04130 0.86 -1.9 850,396 + +0.3 850,652 - BWI76_RS04135 0.17 -0.0 850,836 + BWI76_RS04135 0.31 +0.2 851,062 + BWI76_RS04135 0.48 +0.9 851,062 + BWI76_RS04135 0.48 -1.1 851,077 - BWI76_RS04135 0.49 +0.3 851,136 + +1.5 851,331 + BWI76_RS04135 0.68 -0.9 851,339 - BWI76_RS04135 0.69 +0.0 851,339 - BWI76_RS04135 0.69 -0.9 851,661 - -0.9 851,663 + -0.8 851,752 + -2.1 851,755 - -0.2 851,760 - +7.2 851,896 - -1.3 851,972 + BWI76_RS04140 0.14 +0.6 851,980 - BWI76_RS04140 0.15 -0.2 851,990 - BWI76_RS04140 0.16 -1.3 852,095 + BWI76_RS04140 0.24 -0.7 852,195 + BWI76_RS04140 0.32 -0.6 852,378 + BWI76_RS04140 0.47 -1.0 852,585 + BWI76_RS04140 0.64 -0.6
Or see this region's nucleotide sequence